Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1626g00005 ATGAACAGTAGTGATCAGGCCGCGCAAACCGTTGCGGTTGTGGATTCGGTGGGGTTCAGAGCCGCTATGGCTTCGGCTTCTTCTTCGACCAAACTGTGCTTCAATTCTGACTGCAAAGAATTGAGGCCCGAAAGACCTAAGAAAGGGTGGAGGCTCCGTAGCGGAGAACTAGCCGAGCTCTGCGATCGATGCGGCTCTGCTTTTGAAGAAGGGAGGTTCTGTGAAATTTTCCACTCAAATGCTTCTGGTTGGAGGAGTTGTGAGACTTGTAGAAAGAGAGTTCATTGTGGATGTATTGTTTCAAGTCATTCCTTCATGTTGCTGGATCCCGGAGGGATCGAATGTTATGCATGTGCCCGCAAAAATATTATTATGCCTTCTAACCTGCCGTGGCCACAATCTTTTTCCCTTCAAAATCGTTTATCTGATAGACTTAGAGATCTATCTGCTAAAGGTTGGAATCAGTTGGCTGGATCAGGTCCTGTACCCTGGAAGCAAGCGCCCAGTCTGTTCAATTCTGCTTCTTCGACTGACCTGATACCAGATGTGCCTTCTTTAGCTGAATTATCCAATAGCTTTGACAAAATGTATTGCAATGAAAGGTTACCTGCCTCAGCCTTGGAAAAGAAAAGCGAGGATTATACTGGATTACCAGTTCATTGGAATGTTACAATTTGCCCACGGGAGATGAAGCTTATGAATGGAATGAGGAATGAGGACAAAGCAAGTTCATGTTTAAATATGTGTCAGCAGCCTTCTTCTCTGAAGGAAGAGTCATCGACTCAACCATTTGGTTTGCCGGTGCCTAATTCATGCCAAAATGAAAGAAATGGCCAGCTTGGGGTAACTGGAAGTCACCCTCAACAAACTCCACCACCTCCAGGAAAGCATTTTAATGGCACTATGCATTTAGCACCTGACTCATCAGGTGAGGCTCAGGTTCGCAATGGGCGACCGCGAGCAGATGCCCGAGGAAGAAACCAGTTGCTGCCACGGTACTGGCCCAGATGTACTGATCTTGAACTACAACAAATATCCATAGATTCAAATTCTGTAATTACTCCCTTGTTTCAGAAAACCTTGAGTGCAAGTGATGCTGGACGAATTGGGCGTTTAGTCCTACCCAAAAAGTGTGCTGAGACCTACTTCCCACCAATTTCTCAGCCTGAAGGATTGCCGCTTAAAATCCTTGATGCAAAGGGAAAGGAATGGATATTTCAATTTCGCTTCTGGCCAAACAATAACAGCAGAATGTATGTTTTAGAGGGTGTCACTCCATGCATACAGTCCATGCAGTTACAGGCTGGTGACACTGTAACATTTAGCCGTTTGGAGCCAGAGGGAAGGTTGGTTATGGGATTTAGAAAGGCTTCGAGTGCTGTGCCATCCGACCAGGACAATGAAACTAATAAGTCTGGAAATGGATTTTCTGCACATGGTGAAGTTGAATTGGCTGATCCCAATTCATGGTCTAAAGTTGACAAGTCAGGATACATAGCAAAAGAAGCACTGGGGAGCAAATCATTAATATCTAGAAAAAGAAAAAGTGGCATATTGGGCTCAAAAAGTAAACGTCTAAGAATTGAAAATGAGGATTTAATAGAGCTGAAGATTACGTGGCAAGAAGCTCAAGGTCTGCTCCGGCCCCCTCCTAGCCACATTCCGAGCATCGTTGTGATTGAAGGTTTTGAATTTGAGGAATACGAGGAAGCTCCAGTGCTTGGGAAGCCAACAATTTTTACCAGTGATAATGTGGGTGAAAAGATCCAGTGGGCTCAATGCGAAGATTGTCTCAAGTGGCGTAAATTACCAGCAAGTGCGCTTCTTCCATCAAAATGGACGTGTGCTGATAATTCATGGGATCCAGAAAGATCTTCTTGTTCAGCTGCACCAGAGCTGACAGCAGAGCAACTTGAGAATTTGCTACCTCCTTGTAATTCAGCTGTTCCCAAGAAAATGAAAGCCGCCAAACAGGATCCTGATAATGCTGAAGCTTTGGAGGGACTCGACACCCTCGCAAATTTAGCTATCCTGGGAGAGGGTGAAGCACTCCCAGCATCCGCCCAGGCCACAACTAAGCACCCGCGCCATAGACCTGGCTGTTCTTGCATCGTTTGCATTCAACCTCCCAGTGGAAAGGGCCCCAAGCATAAGCAGACATGTACGTGTAATGTATGCTTAACAGTGAAGCGACGTTTCCGTACCCTTATGTTACGACGCGAGAAGAAACAAACAGAAAAAGAAGCAGAGACAACTCGTAAAAAGCAACAGCAACAACATTCTCAACCACTACCTTCGTCTGAAATTTTGCATGACGAAGATTCATTACCCTGTAGTAACACAGGTGACAGTAGCCCGAACCAGAACAAAGAGGGTAATGATGGTTCTGATGATGATCCTAACAGAATAAAATCATCTGCTTCACCATTCAAAGGCCAAATTGACCTCAATATCCAGCCAGAGCGAGAAGAAGAATTGTCCCCTGGTTCAGATTCTGGTGGCATGATGAAGTTGCTCCATGATGCTACTGAGAGGTATCTGAAGCAGCAGACTGTGAACTCGGGTACTGGAGATTCTGCTGGCAGTCAGTCACAGCTGGTAGGAGATGCAATGAGGGAAGATAAACTTAGCAATGGTGTTACCCATGGCAGTAGTAGTCATAGTACTGATAAGGAACATGCTCAATCTTTGTCTATGAATGTGTGA 2706 0.4531 MNSSDQAAQTVAVVDSVGFRAAMASASSSTKLCFNSDCKELRPERPKKGWRLRSGELAELCDRCGSAFEEGRFCEIFHSNASGWRSCETCRKRVHCGCIVSSHSFMLLDPGGIECYACARKNIIMPSNLPWPQSFSLQNRLSDRLRDLSAKGWNQLAGSGPVPWKQAPSLFNSASSTDLIPDVPSLAELSNSFDKMYCNERLPASALEKKSEDYTGLPVHWNVTICPREMKLMNGMRNEDKASSCLNMCQQPSSLKEESSTQPFGLPVPNSCQNERNGQLGVTGSHPQQTPPPPGKHFNGTMHLAPDSSGEAQVRNGRPRADARGRNQLLPRYWPRCTDLELQQISIDSNSVITPLFQKTLSASDAGRIGRLVLPKKCAETYFPPISQPEGLPLKILDAKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRLEPEGRLVMGFRKASSAVPSDQDNETNKSGNGFSAHGEVELADPNSWSKVDKSGYIAKEALGSKSLISRKRKSGILGSKSKRLRIENEDLIELKITWQEAQGLLRPPPSHIPSIVVIEGFEFEEYEEAPVLGKPTIFTSDNVGEKIQWAQCEDCLKWRKLPASALLPSKWTCADNSWDPERSSCSAAPELTAEQLENLLPPCNSAVPKKMKAAKQDPDNAEALEGLDTLANLAILGEGEALPASAQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCLTVKRRFRTLMLRREKKQTEKEAETTRKKQQQQHSQPLPSSEILHDEDSLPCSNTGDSSPNQNKEGNDGSDDDPNRIKSSASPFKGQIDLNIQPEREEELSPGSDSGGMMKLLHDATERYLKQQTVNSGTGDSAGSQSQLVGDAMREDKLSNGVTHGSSSHSTDKEHAQSLSMNV 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1626g00005 901 SUPERFAMILY DNA-binding pseudobarrel domain 354 456 IPR015300 -
Vium1626g00005 901 MobiDBLite consensus disorder prediction 460 476 - -
Vium1626g00005 901 Gene3D - 335 461 IPR015300 -
Vium1626g00005 901 MobiDBLite consensus disorder prediction 254 325 - -
Vium1626g00005 901 MobiDBLite consensus disorder prediction 756 791 - -
Vium1626g00005 901 ProSiteProfiles Zinc finger CW-type profile. 585 635 IPR011124 GO:0008270
Vium1626g00005 901 CDD B3_DNA 355 456 IPR003340 GO:0003677
Vium1626g00005 901 FunFam B3 domain-containing transcription repressor VAL1 335 462 - -
Vium1626g00005 901 Pfam CW-type Zinc Finger 590 632 IPR011124 GO:0008270
Vium1626g00005 901 Gene3D - 589 642 - -
Vium1626g00005 901 MobiDBLite consensus disorder prediction 254 286 - -
Vium1626g00005 901 SMART B3_2 357 458 IPR003340 GO:0003677
Vium1626g00005 901 MobiDBLite consensus disorder prediction 739 755 - -
Vium1626g00005 901 Coils Coil 739 759 - -
Vium1626g00005 901 ProSiteProfiles B3 DNA-binding domain profile. 357 458 IPR003340 GO:0003677
Vium1626g00005 901 Pfam B3 DNA binding domain 357 456 IPR003340 GO:0003677
Vium1626g00005 901 MobiDBLite consensus disorder prediction 738 901 - -
Vium1626g00005 901 MobiDBLite consensus disorder prediction 457 480 - -
Vium1626g00005 901 MobiDBLite consensus disorder prediction 846 866 - -
Vium1626g00005 901 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 30 860 - -
Vium1626g00005 901 MobiDBLite consensus disorder prediction 878 901 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1626g00005 Vium-Chr1626 36658 48340 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1626g00005 288 892 B3 DNA Binding Superfamily AT4G32010 46.743 3.46e-165 499
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vium1626g00005 B3 1.3e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1626g00005 K09287 - gmx:100782114 1656.73