Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1624g00002 ATGGAAATTGGAATAGTCTATGAGGAATCTTCTGGTGGAAGGAAACTTGAACAGGAACAGGGACAAGAACATGATCAAGAATTGCATTGCTCCAGGGAGAGAAGTAGGGCAGCTCGGAAAGTGATAGAGGAGTATTTGATACCATTTGTGGAACGAGAAAACTACCGGCTTTCAACTAAATGCAGACTTCACCCTGAAAATGATATATTTAGCGATCAGGAAGAGCATAAAATATTCATAGATAGACATGAATGGCAGTGTGGATATTGTAAGAAAAGCTTTCGGGAAGAGAAATTTCTAGATCAGCATTTTGATAACAGACACTACAATCTTCTGAATGTGAGTCATGGTAAATGCTTGGCTGATTTATGTGGTGCGATGCATTGTGATGCTGTGACGAATTTCAGATCCCCCAGAAGCAAATGTAATCTAGCAGCTGCTGCAAGAAATCGTCATCTATGTGAGAGTCTTGCTGACAATTGTTTTCCTATAAGTGATGGTCCAGCAGCAGGCCGCCTTCATGAATTGTTTCTGCACCAATTTTGTGATGCTCACACTTGCTCAGGGAAACATAAACCCTTCTCTCGAGGAGGCAAGGATCAAAGTAGTTTCTTCCGCCTGGCTGCTGGAGCATTGATCTTGGTGCTACTTCCTGTCTTCTATCTTTTTCTTTATTTGATACAAAGTGATGTGAGGAATCGAACCCAAGAACTTCGTCGCATTCCAAAAGCTGGATGGAAAACAAAACCATCATGA 756 0.4153 MEIGIVYEESSGGRKLEQEQGQEHDQELHCSRERSRAARKVIEEYLIPFVERENYRLSTKCRLHPENDIFSDQEEHKIFIDRHEWQCGYCKKSFREEKFLDQHFDNRHYNLLNVSHGKCLADLCGAMHCDAVTNFRSPRSKCNLAAAARNRHLCESLADNCFPISDGPAAGRLHELFLHQFCDAHTCSGKHKPFSRGGKDQSSFFRLAAGALILVLLPVFYLFLYLIQSDVRNRTQELRRIPKAGWKTKPS 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1624g00002 251 ProSiteProfiles Zinc finger C2H2 type domain profile. 85 108 IPR013087 -
Vium1624g00002 251 ProSitePatterns Zinc finger C2H2 type domain signature. 87 108 IPR013087 -
Vium1624g00002 251 PANTHER ZINC FINGER PROTEIN-RELATED 19 250 - -
Vium1624g00002 251 MobiDBLite consensus disorder prediction 8 30 - -
Vium1624g00002 251 MobiDBLite consensus disorder prediction 12 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1624g00002 Vium-Chr1624 29715 33939 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1624g00002 7 251 C2H2 Transcription Factor Family AT5G63280 60.408 4.77e-104 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium1624g00002 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1624g00002 - - gmx:100780668 442.965