Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1621g00002 ATGATGTTTTCAGTGATGAGAATTCTTTGCTTGTTGCCTTTTCTGCTCACTTTGTGTCTGTCAAAATCTCTGCTGGTGGGTGGTGAGTTGCAGGAACAAACTTTACTACCTTCCATCAACCAAAATCTCAGAGTTCCAGGCTGGAATGCCAGCACCTCAGATTACTGCTCCTGGAAAGGTGTCATCTGTGGCAACCTCTCACTGGTGGAGAAGCTCACTCTCTCTAATCAGAATCTTGGAGGCAATGTAAGTTCAATTTCCAGGCTCAAAGCTTTGAAGTGGCTTGACCTTTCAAACAATAACTTTCAAGGGATGATTCCAGCTGCTTTTGGAAATTTATCCCATCTTGAATATCTTGACTTGTCTTCAAACAAGTTTGAAGGTTCAATTCCACCACAATTGGGAGGTCTCAAAAGCCTCAAATCATTGAACTTTTCCAATAACATGCTGGTGGGAGAGATACCTAAGGAACTTCAAGGCCTTGAGACTTTACAGGATTTTCAAATTTTCAACAATCATCTGAGTGGTTCCATACCCAACTGGGTTGAGCACTGGACCAATCTGAGAGTTTTTGCTGCTTATGAGAATCATTTCAATGGAAGGATTCCAGATGCTCTGGGATTCCTTTCTGAGCTTACAACACTGAACCTGCATTCAAACCACCTTGAAGGTCCTATACCAGGAAGCCTCTTTTCTGCATGGAAGCTAGAAGTTCTGATTCTCAGTCAGAACAACTTGAGTGGTGAAATTCCGGAGGAAATCGGGAACTGTCGAACTCTTGTCAGTGTTCGAATTGGAAACAATAATCTACAAGGTAATATTCCTAAGAGTGTTGGAAACCTTACTAGCCTTGCTTACTTTGAAGCTGATGATAATAATCTTTCTGGTGAGTTAGTATCAGAGTTTTCTCTGTGTTATAATCTCACCTTCTTGAACTTGGCTTCAAATGGATTTACTGGAATAATTTCACCAGAATTTGGAAAGCTTATGAACCTGCAGGTGTTGATGCTTTCTGAAAATCTCCTTCATGGTGATATTCCAGAATCGATTCTTCAGATCAGAAGTCTTGAGATTCTTGACTTAAGCAATAACAGGTTCAATGGAACAATACCAAACGGAATCTGTGACATCGCTCAGTTGCAGAAGCTGNCGATATTGATATCTCTCTTTTCAATCTTCACATCTTCAACAAAAGCAAAAGATCTTTCTTTTTTTGTTAAGATGATGTTTTCAGTGATGAGAATTCTTTGCTTGTTGCCTTTTCTGCTCACTTTGTGTCTGTCAAAATCTCTGCTGGTGGGTGGTGAGTTGCAGGAACAAACTTTACTACCTTCCATCAACCAAAATCTCAGAGTTCCAGGCTGGAATGCCAGCACCTCAGATTACTGCTCCTGGAAAGGTGTCATCTGTGGCAACCTCTCACTGGTGGAGAAGCTCACTCTCTCTAATCAGAATCTTGGAGGCAATGTAAGTTCAATTTCCAGGCTCAAAGCTTTGAAGTGGCTTGACCTTTCAAACAATAACTTTCAAGGGATGATTCCAGCTGCTTTTGGAAATTTATCCCATCTTGAATATCTTGACTTGTCTTCAAACAAGTTTGAAGGTTCAATTCCACCACAATTGGGAGGTCTCAAAAGCCTCAAATCATTGAACTTTTCCAATAACATGCTGGTGGGAGAGATACCTAAGGAACTTCAAGGCCTTGAGACTTTACAGGATTTTCAAATTTTCAACAATCATCTGAGTGGTTCCATACCCAACTGGGTTGAGCACTGGACCAATCTGAGAGTTTTTGCTGCTTATGAGAATCATTTCAATGGAAGGATTCCAGATGCTCTGGGATTCCTTTCTGAGCTTACAACACTGAACCTGCATTCAAACCACCTTGAAGGTCCTATACCAGGAAGCCTCTTTTCTGCATGGAAGCTAGAAGTTCTGATTCTCAGTCAGAACAACTTGAGTGGTGAAATTCCGGAGGAAATCGGGAACTGTCGAACTCTTGTCAGTGTTCGAATTGGAAACAATAATCTACAAGGTAATATTCCTAAGAGTGTTGGAAACCTTACTAGCCTTGCTTACTTTGAAGCTGATGATAATAATCTTTCTGGTGAGTTAGTATCAGAGTTTTCTCTGTGTTATAATCTCACCTTCTTGAACTTGGCTTCAAATGGATTTACTGGAAAAATTTCACCAGAATTTGGAAAGCTTATGAACCTGCAGGTGTTGATGCTTTCTGAAAATCTCCTTCATGGTGATATTCCAGAATCGATTCTTCAGATCAGAAGTCTTGAGATTCTTGACTTAAGCAATAACAGGTTCAATGGAACAATACCAAACGGAATCTGTGACATCGCTCAGTTGCAGAAGCTGCTGTTGGACAGGAATTTCATAAGAGGAGTGATCCCTCAGGAAATTGGAAGGTGTAGAGAACTTCTTGAATTGAAATTGGGGAGTAACAATCTGACAGGAACTATTCCCTCTCAGATTGGTCACATGCATAACTTGGAGATAGCCTTAAATTTGAGCTACAACCATCTTCAAGGACAATTGCCCCCAGAATTAGGAAGACTGATCAAACTTGGTTCTCTGGATATTTCCAACAATAATCTCACAGGTAATATCCCTGATACATTTATCGGGATGGTGGGCTTGATTGTCATTAACATGTCAAATAATCAGCTCAGTGGTAAATTGCCAAAGTGTGCATCATTCCTGCATAATCCTGCTTCAAGTTATTTGGGCAACAGAGGGCTTTGCGGGGAGCCATTGAACATTACATGTGAAGATATTCGCTATCGTTACATAGCTGTGGAAAACAATAATAAATTTACTTACGAAACCATAATGTATATACTTGGACCGTTTCTTCTGGCTTTTATGTTATTTGCTGCAGTTGTCTTGGTAAACAGAGTGTGTCAGAGGAAAGTAGAAAAAGTTCCTGAGATAGAATGTGGTGAAAGCATTAAAGAAGCATCTATAATATCAGGAAAAGTTTTCGCTGACAATCTAAGAGAAGAAGTAGACCTTGAAGCGGTTGCTAAAGCAACTCTTGAAGAATCTAATAAGCTTAGCAGTGGCACTTTCAGTGCACTTTACAAGGCATTGATGCCCTCTGGGGTAGTCTTACTTGTAAGGAAAATAATCCCTATGGACATGACAATAATGCAGCGGCAGAGCAAGATCATTTCAGAGCTTCACAGGCTTATAAAACTATCCCATGAACATGTAATGAAACCCGTTGGATATGTGATTTGTAGCGATGCTGCTCTTCTCATATATCAGTACATATCCTGTGGAACATTGGCTCAACTTCTTCATGAACCTGCAATGCAACCTGAATATCAGCTCGATTGGCCTGCTAGGTTCTCTATTGCAATGGGAATAGCAAAAGGTTTGGTTTTCCTTCATCAGAAGGCAATTATCCACCTTGACATTTCTTCTAGCAATATTCTTCTAGATGCATATTTAGGGCCACTGATTGGGGACATCGAAATATCAAAGTTCTTAGATCAAACTAAAGGAAGTGCTAGTATTGTCCCATATGTAGGTTCTTTTGGTTACGTTCCACCAGAATATGCATACACAATGCGAGTGACAGCAGCTGGAAATATTTATAGCTTTGGTGTGATACTGCTGGAGATGGTAACTTCCAGAGCAGCATTTGATGAGGGTAATGGAGAAGGTGTAGACTTGGTGAAGTGGGTTCGTGAAGCTGCAGCAAGAGGTGAAAGTCCAGAGCAGATAATGGATGCAACGCTTAGCTCAGTGTGCGATGAATGGAGAAAAGAAATGCTTGATACTCTGAAAGTGGCCTTGTTCTGCACTCAAATCAGGCCAAAAAACCGACCAAATATCAACAACGTTGTGGGAATGCTTCGAGAAATAAGGAACCAAATTGATTTCTGTGTCGATTGA 3915 0.4054 MMFSVMRILCLLPFLLTLCLSKSLLVGGELQEQTLLPSINQNLRVPGWNASTSDYCSWKGVICGNLSLVEKLTLSNQNLGGNVSSISRLKALKWLDLSNNNFQGMIPAAFGNLSHLEYLDLSSNKFEGSIPPQLGGLKSLKSLNFSNNMLVGEIPKELQGLETLQDFQIFNNHLSGSIPNWVEHWTNLRVFAAYENHFNGRIPDALGFLSELTTLNLHSNHLEGPIPGSLFSAWKLEVLILSQNNLSGEIPEEIGNCRTLVSVRIGNNNLQGNIPKSVGNLTSLAYFEADDNNLSGELVSEFSLCYNLTFLNLASNGFTGIISPEFGKLMNLQVLMLSENLLHGDIPESILQIRSLEILDLSNNRFNGTIPNGICDIAQLQKLXILISLFSIFTSSTKAKDLSFFVKMMFSVMRILCLLPFLLTLCLSKSLLVGGELQEQTLLPSINQNLRVPGWNASTSDYCSWKGVICGNLSLVEKLTLSNQNLGGNVSSISRLKALKWLDLSNNNFQGMIPAAFGNLSHLEYLDLSSNKFEGSIPPQLGGLKSLKSLNFSNNMLVGEIPKELQGLETLQDFQIFNNHLSGSIPNWVEHWTNLRVFAAYENHFNGRIPDALGFLSELTTLNLHSNHLEGPIPGSLFSAWKLEVLILSQNNLSGEIPEEIGNCRTLVSVRIGNNNLQGNIPKSVGNLTSLAYFEADDNNLSGELVSEFSLCYNLTFLNLASNGFTGKISPEFGKLMNLQVLMLSENLLHGDIPESILQIRSLEILDLSNNRFNGTIPNGICDIAQLQKLLLDRNFIRGVIPQEIGRCRELLELKLGSNNLTGTIPSQIGHMHNLEIALNLSYNHLQGQLPPELGRLIKLGSLDISNNNLTGNIPDTFIGMVGLIVINMSNNQLSGKLPKCASFLHNPASSYLGNRGLCGEPLNITCEDIRYRYIAVENNNKFTYETIMYILGPFLLAFMLFAAVVLVNRVCQRKVEKVPEIECGESIKEASIISGKVFADNLREEVDLEAVAKATLEESNKLSSGTFSALYKALMPSGVVLLVRKIIPMDMTIMQRQSKIISELHRLIKLSHEHVMKPVGYVICSDAALLIYQYISCGTLAQLLHEPAMQPEYQLDWPARFSIAMGIAKGLVFLHQKAIIHLDISSSNILLDAYLGPLIGDIEISKFLDQTKGSASIVPYVGSFGYVPPEYAYTMRVTAAGNIYSFGVILLEMVTSRAAFDEGNGEGVDLVKWVREAAARGESPEQIMDATLSSVCDEWRKEMLDTLKVALFCTQIRPKNRPNINNVVGMLREIRNQIDFCVD 1304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1621g00002 1304 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 1096 1300 - -
Vium1621g00002 1304 FunFam Nuclear pore complex protein NUP107 33 178 - -
Vium1621g00002 1304 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 636 931 - -
Vium1621g00002 1304 Gene3D Ribonuclease Inhibitor 261 385 IPR032675 -
Vium1621g00002 1304 Gene3D Phosphorylase Kinase; domain 1 983 1095 - -
Vium1621g00002 1304 FunFam Nuclear pore complex protein NUP107 442 587 - -
Vium1621g00002 1304 Pfam Protein kinase domain 1018 1288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1621g00002 1304 Gene3D Ribonuclease Inhibitor 30 182 IPR032675 -
Vium1621g00002 1304 FunFam MDIS1-interacting receptor like kinase 2 isoform A 179 278 - -
Vium1621g00002 1304 Gene3D Ribonuclease Inhibitor 184 260 IPR032675 -
Vium1621g00002 1304 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 674 1293 - -
Vium1621g00002 1304 SMART LRR_typ_2 832 857 IPR003591 -
Vium1621g00002 1304 SMART LRR_typ_2 520 543 IPR003591 -
Vium1621g00002 1304 SMART LRR_typ_2 353 377 IPR003591 -
Vium1621g00002 1304 SMART LRR_typ_2 209 233 IPR003591 -
Vium1621g00002 1304 SMART LRR_typ_2 235 257 IPR003591 -
Vium1621g00002 1304 SMART LRR_typ_2 616 640 IPR003591 -
Vium1621g00002 1304 SMART LRR_typ_2 760 784 IPR003591 -
Vium1621g00002 1304 SMART LRR_typ_2 544 567 IPR003591 -
Vium1621g00002 1304 SMART LRR_typ_2 642 664 IPR003591 -
Vium1621g00002 1304 SMART LRR_typ_2 113 136 IPR003591 -
Vium1621g00002 1304 SMART LRR_typ_2 137 160 IPR003591 -
Vium1621g00002 1304 SMART LRR_typ_2 89 112 IPR003591 -
Vium1621g00002 1304 SMART LRR_typ_2 496 519 IPR003591 -
Vium1621g00002 1304 ProSiteProfiles Protein kinase domain profile. 1017 1301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1621g00002 1304 SUPERFAMILY L domain-like 460 634 - -
Vium1621g00002 1304 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 300 391 - -
Vium1621g00002 1304 SUPERFAMILY RNI-like 585 932 - -
Vium1621g00002 1304 Pfam Leucine rich repeat 70 126 IPR001611 GO:0005515
Vium1621g00002 1304 Pfam Leucine rich repeat 477 533 IPR001611 GO:0005515
Vium1621g00002 1304 Pfam Leucine rich repeat 307 366 IPR001611 GO:0005515
Vium1621g00002 1304 Pfam Leucine rich repeat 714 773 IPR001611 GO:0005515
Vium1621g00002 1304 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 987 1095 - -
Vium1621g00002 1304 Gene3D Ribonuclease Inhibitor 469 641 IPR032675 -
Vium1621g00002 1304 Gene3D Ribonuclease Inhibitor 642 930 IPR032675 -
Vium1621g00002 1304 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1140 1152 IPR008266 GO:0004672|GO:0006468
Vium1621g00002 1304 Gene3D Transferase(Phosphotransferase) domain 1 1097 1301 - -
Vium1621g00002 1304 SUPERFAMILY Protein kinase-like (PK-like) 1013 1292 IPR011009 -
Vium1621g00002 1304 Pfam Leucine rich repeat N-terminal domain 453 470 IPR013210 -
Vium1621g00002 1304 Pfam Leucine rich repeat N-terminal domain 46 63 IPR013210 -
Vium1621g00002 1304 SUPERFAMILY L domain-like 46 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1621g00002 Vium-Chr1621 5313 11408 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1621g00002 332 845 Receptor kinase-like Gene Family AT2G41820 31.021 2.42e-47 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vium1621g00002 Pkinase 5.6e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1621g00002 - - vum:124827200 2511.87