Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1621g00001 AACTTATCAGCAAAATCTTTGCAGGTGTATTGTTTGGAGCACAGAGGTTATATTAAACATCAGTGTCCAAAAGCAGACAAGCAAGATGTAACTGTAGTTGTATGTCCACTTTGCGCTAAAGGAGTTCGTTTAGTTCCTGATCAAGATGCAAATATAACTTGGGAGAATCATGTCAACACTGACTGTGACCCATCGAACTATGAGAAAGTCACGAAGAAGAAAAAATGCCCTGTCCCAGGATGCAGAGAGATATTAGGATTCTCAAACACAATTAAGTGCAGGGACTGCATGGTAGACCATTGTTTAAAGCATCGGTTTGGACCTGATCATAAATGTCCTGGTCCCAGAAAAATGGAAACAAGTTTTTCATTCAGGAATCTTTTGAATGTGAGTAAAAAACAGGAGTCCAAACCGCAGCCAAGTTCATCTGCATCATCTAGATGGTCTACAGGCTTTCTTAATGCAGTTTCTAACATTCGATCATCAGCAGAGGCTGGTGTGTCTAAGTTGAGTGAAGCTAACCAAGGCTGGTGGAAAGCATCAGGTGGGGTGGGAGCTAGCCAGAGTAGTGGTCAAGTGGAGCAATGCCCTCAGTGTGGTGCCAAGTTTTCCTCTGTTACTGCTTTGGTGGACCATGTGCAAAAAGTTCATGAAAGGAGTGGCAACCGATCTGGACCAAAGGTTGCAATTGATGCTTGCCCTAAGTGTAGCAGAGGATTTCAGGATCCTGTTGCCCTTGTGGAACATGTTGAGAGGGATCATGGTGGCAATTCTAGATCATAA 783 0.4342 NLSAKSLQVYCLEHRGYIKHQCPKADKQDVTVVVCPLCAKGVRLVPDQDANITWENHVNTDCDPSNYEKVTKKKKCPVPGCREILGFSNTIKCRDCMVDHCLKHRFGPDHKCPGPRKMETSFSFRNLLNVSKKQESKPQPSSSASSRWSTGFLNAVSNIRSSAEAGVSKLSEANQGWWKASGGVGASQSSGQVEQCPQCGAKFSSVTALVDHVQKVHERSGNRSGPKVAIDACPKCSRGFQDPVALVEHVERDHGGNSRS 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1621g00001 260 ProSitePatterns Zinc finger C2H2 type domain signature. 233 254 IPR013087 -
Vium1621g00001 260 ProSiteProfiles Zinc finger AN1-type profile. 70 120 IPR000058 GO:0008270
Vium1621g00001 260 ProSiteProfiles Zinc finger C2H2 type domain profile. 231 259 IPR013087 -
Vium1621g00001 260 SMART c2h2final6 231 254 IPR013087 -
Vium1621g00001 260 SMART c2h2final6 194 217 IPR013087 -
Vium1621g00001 260 ProSiteProfiles Zinc finger C2H2 type domain profile. 194 222 IPR013087 -
Vium1621g00001 260 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 8 222 - -
Vium1621g00001 260 Pfam AN1-like Zinc finger 76 115 IPR000058 GO:0008270
Vium1621g00001 260 Gene3D - 61 147 IPR035896 -
Vium1621g00001 260 ProSitePatterns Zinc finger C2H2 type domain signature. 196 217 IPR013087 -
Vium1621g00001 260 Gene3D Classic Zinc Finger 171 257 - -
Vium1621g00001 260 Pfam C2H2-type zinc finger 195 217 - -
Vium1621g00001 260 SUPERFAMILY AN1-like Zinc finger 68 121 IPR035896 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1621g00001 Vium-Chr1621 606 2698 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1621g00001 5 260 C2H2 Transcription Factor Family AT2G41835 58.915 8.12e-104 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium1621g00001 zf-AN1 4.7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1621g00001 - - gmx:100786272 425.246