Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1620g00015 ATGGATGAGGAAGGATCAAGGGGAAAAACCAAGGACGAGCCTGGAGATGTCCGTTACCGGGGAGTTCGCCGGCGGCCCTGGGGGAAGTTCGCCGCGGAGATTCGAGACTCCACCAGGCAAGGCCAAAGGGTGTGGCTGGGAACTTTCAACACGGCGGAGGAAGCAGCCAGAGCCTATGATAGAGCTGCTTATGCCATGAGAGGTCCATTCGCAATCCTGAACTTCCCTGAGGAGTACCCTATGACTGCTGGTGGTGCCACTAATGCCGCCACTCATTCCTCTGTTGCTTCGTCGTCCTCTTCCTCTTCCTCCAGGCATGCAAATGTGGAAGCCAGAGGAAGAAGTGACCAAGGAAGACAAGTGTTTGAGTTCGAGTACTTAGACGACAAATTGTTGGAGGAGCTTCTAGACTTTGAAGACAAAAAGAAAAGGGGCCCCTGA 441 0.5374 MDEEGSRGKTKDEPGDVRYRGVRRRPWGKFAAEIRDSTRQGQRVWLGTFNTAEEAARAYDRAAYAMRGPFAILNFPEEYPMTAGGATNAATHSSVASSSSSSSSRHANVEARGRSDQGRQVFEFEYLDDKLLEELLDFEDKKKRGP 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1620g00015 146 FunFam Ethylene-responsive transcription factor 2 18 77 - -
Vium1620g00015 146 MobiDBLite consensus disorder prediction 1 20 - -
Vium1620g00015 146 SMART rav1_2 18 82 IPR001471 GO:0003700|GO:0006355
Vium1620g00015 146 PANTHER DNA-BINDING DOMAIN 13 141 IPR044808 GO:0003700|GO:0009873
Vium1620g00015 146 MobiDBLite consensus disorder prediction 81 116 - -
Vium1620g00015 146 CDD AP2 18 77 IPR001471 GO:0003700|GO:0006355
Vium1620g00015 146 MobiDBLite consensus disorder prediction 86 108 - -
Vium1620g00015 146 SUPERFAMILY DNA-binding domain 18 77 IPR016177 GO:0003677
Vium1620g00015 146 Pfam AP2 domain 18 68 IPR001471 GO:0003700|GO:0006355
Vium1620g00015 146 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Vium1620g00015 146 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
Vium1620g00015 146 Gene3D AP2/ERF domain 17 77 IPR036955 GO:0003700|GO:0006355
Vium1620g00015 146 ProSiteProfiles AP2/ERF domain profile. 18 76 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1620g00015 Vium-Chr1620 113616 114321 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1620g00015 18 143 AP2-EREBP Transcription Factor Family AT3G23230 62.698 2.63e-41 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium1620g00015 AP2 1.9e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1620g00015 - - gmx:100775830 211.46