Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1620g00014 ATGGATCTTGCAAGCAGAAGATACTTGATTTATGTCTCACAACATGTGTCACAATCGGAAGCACTTTCTCCGGTCACAAGTCCAGGGGGTTCGTTCTTTCATCCTCATCAGCATTCTTCTAGCACCAGTTTTCCCATAATCGCAATTGCCATAATAGGAATAATGGCCACGGCTTTCTTGCTTGTGAGCTACTACATCTTTGTGATCAAATGCTGCCTCAATTGGCACAGAATTGATATTCTAAGACGTTTTTCTCCATCTAGAAGGCGTGAAGATCCATCACCCATGTACTCACCAGGCACAGAAGCTCGTGGACTGGATGAGGCAATGATCCGGTTAATCCCTGTGATTCAATACAAGACACAGGGGGATGATAGAGAATCTGGAGAATGTGCTGTTTGCTTGAATGAGTTTCAAGAAGATGAGAAGCTCAGGATTATACCAAATTGCAGTCATGTGTTTCACATTGATTGCATAGATGTTTGGCTTCAGAGCAATGCCAATTGTCCTCTGTGTAGAACAAGCATTTCCTTGACAAGCAGATTCCACGTTGAGCAGCTTCTTGCACTAAGGTCTTCTTCCCCTCCGGATCAAACTCCACCAAGGGAAAACCACATAGGAAGAGATGAAGATTTTGTTGTAATTGAATTGGGTAATATCCACGATAGAAGCCAAAATTTGCGAGAGAGAGGAAATGGTTTGGAGTTACCATCACCAACATCTCTTATTAGTTCTTGTACGCCAAGGAAATTGGAACAAGGAAATGTGCAGAAGAAAGCAATGAAACTGCATAAAGTGACGAGCATGGGAGATGAGTGTATTGATATTAGAGCAAAAGATAACCAGTTCTCAGTGCAACCAATCAGAAGGTCTTTCTCCATGGACTCATCAGGGGATAGACAGTTCTATTTAGCAGTTCAAGAAGCTCTGAGGCTGCAGAACAGGCAAGTCAATGAAGTCAGCACCACCGAAGGCTGCAGTGGTAGTGGTAGCAATAGAGTCAAGAGATCATTCTTTTCCTTCGGACATGGAAGTAGATCCAGGAGTTCTGTGCAACCCGTTTCTTTGGAACCCTGA 1077 0.4336 MDLASRRYLIYVSQHVSQSEALSPVTSPGGSFFHPHQHSSSTSFPIIAIAIIGIMATAFLLVSYYIFVIKCCLNWHRIDILRRFSPSRRREDPSPMYSPGTEARGLDEAMIRLIPVIQYKTQGDDRESGECAVCLNEFQEDEKLRIIPNCSHVFHIDCIDVWLQSNANCPLCRTSISLTSRFHVEQLLALRSSSPPDQTPPRENHIGRDEDFVVIELGNIHDRSQNLRERGNGLELPSPTSLISSCTPRKLEQGNVQKKAMKLHKVTSMGDECIDIRAKDNQFSVQPIRRSFSMDSSGDRQFYLAVQEALRLQNRQVNEVSTTEGCSGSGSNRVKRSFFSFGHGSRSRSSVQPVSLEP 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1620g00014 358 CDD RING-H2_EL5-like 130 173 - -
Vium1620g00014 358 SUPERFAMILY RING/U-box 122 179 - -
Vium1620g00014 358 PANTHER RING-H2 FINGER PROTEIN ATL16 33 354 IPR044600 GO:0016567|GO:0016740
Vium1620g00014 358 SMART ring_2 131 172 IPR001841 -
Vium1620g00014 358 Pfam Ring finger domain 130 173 IPR001841 -
Vium1620g00014 358 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 181 IPR013083 -
Vium1620g00014 358 ProSiteProfiles Zinc finger RING-type profile. 131 173 IPR001841 -
Vium1620g00014 358 FunFam E3 ubiquitin-protein ligase ATL6 96 179 - -
Vium1620g00014 358 MobiDBLite consensus disorder prediction 338 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1620g00014 Vium-Chr1620 101706 103661 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1620g00014 35 358 C3H Transcription Factor Family AT1G04360 53.371 1.42e-103 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1620g00014 - - gmx:100775286 570.852