Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1620g00011 ATGGCTAAAGCTATGGAGCAACAGAAAAGAGCTTCTCATGTGTTCGTGTACAGAGAGTTAAAGCCACACCTGTTCATGGTTATAGTCCAGGTGGGATATACCTTCTTGTATTTCATCACCGAAGCCTCCTTCAATCATGGGATGAGTCCTCATGTCTATGTAACATATCGCCATATTGTGGCCACGGTTGTGATGTTCCCTTTTGCATACTTTCTGGAGAGAGATGCTAGACCGAAGCTGACATTTGCTCTTCTCATGGAAATTTTTTTGCTTTCTCTGTTAGGGGTTAGTGTAACCCTTAACATGTACTTTGCAAGCCTTAACTACACAAATCCGACCTTTGTTGCTTCCATGGTCAACACCATAGCTTCCCTTACCTTCATTATTGCTGTAGCAATCAGGTTTGAGGTTGTTGATGTTTGGAATCCTCGTGGTATTGCAAAAGTTATTGGGACCATGATCTCCTTAGCTGGTGTTTTGATTATGACACTGTACAAAGGACCCGTCATCAAAAATTTATGGCGTCCTCTAATCCACATTCCACGGAAAAGTGCTGCTATCAACGAAGACTGGTTAAAGGGTTCGATTCTTACAGTTTCAAGCTGTGTTGCATGGTCTTTATGGTACATTATGCAGGCATCCACTTTGAAAAGATACCCTGCTCAACTCTCACTCACCACGTGGATGTGCTTTGTTGGAGCAGCACAATCAGCTGTTTTTACTGTTATAATAGAACACGACTCTTCTGCATGGACTATGGGGCTAAACATTGACTTGTGGTCCACAATATATGGTGGAGTTGTAGTTGCTGGCTTCATAATCTACATTCAACTATGGTGTACTGAGAAAAGAGGACCAGTTTTTGTCACAATGTTTAACCCTCTTTCTACTATATTGGTGGCAATTCTAGCCTACTTTGTCTTTGGTGAGAAACTTTATCTGGGCAGCATCATAGGTTCACTCATTGTCATAATTGGTCTTTACTTCCTGTTATGGGGCAAAGAACGTGACCAAGCGGTTTGCATGAAGAGCACAGATAAGTCACAGTGCAGTGCTGCAGACCCAGAATGCAGAATGTAG 1080 0.4231 MAKAMEQQKRASHVFVYRELKPHLFMVIVQVGYTFLYFITEASFNHGMSPHVYVTYRHIVATVVMFPFAYFLERDARPKLTFALLMEIFLLSLLGVSVTLNMYFASLNYTNPTFVASMVNTIASLTFIIAVAIRFEVVDVWNPRGIAKVIGTMISLAGVLIMTLYKGPVIKNLWRPLIHIPRKSAAINEDWLKGSILTVSSCVAWSLWYIMQASTLKRYPAQLSLTTWMCFVGAAQSAVFTVIIEHDSSAWTMGLNIDLWSTIYGGVVVAGFIIYIQLWCTEKRGPVFVTMFNPLSTILVAILAYFVFGEKLYLGSIIGSLIVIIGLYFLLWGKERDQAVCMKSTDKSQCSAADPECRM 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1620g00011 359 SUPERFAMILY Multidrug resistance efflux transporter EmrE 56 166 - -
Vium1620g00011 359 PANTHER WAT1-RELATED PROTEIN 22 343 IPR030184 GO:0016020|GO:0022857
Vium1620g00011 359 SUPERFAMILY Multidrug resistance efflux transporter EmrE 255 335 - -
Vium1620g00011 359 Pfam EamA-like transporter family 193 331 IPR000620 GO:0016020
Vium1620g00011 359 Pfam EamA-like transporter family 36 163 IPR000620 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1620g00011 Vium-Chr1620 81166 83608 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1620g00011 21 340 Nodulin-like Gene Family AT5G07050 41.818 1.71e-95 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1620g00011 - - gmx:100527877 619.387