Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1615g00004 ATGGGTTGTGTCCATGGCAAGTGTTGCTGTGGCGAACATACTTCATCAGAGGATGGTTCCAGGGATTACCGAGAAACTGGCTTCGTTCGTAGCCACAGGAAAAACATAATCGCACAGAGATCACTGAAGCGTGCTCCTGTTCCTTCTCACAACTTCATTTTGGAATACACTTTTCTCACTCAGCGGGGATACTACCCCGACTCACCTGATAAAGCAAACCAAGATAGTTTTTGCATTAGTACAAATCTCCAAGGTAACCCCAATGTTCATTTCTTTGGCGTCTATGATGGGCATGGTCAATTTGGTAGTCAGTGTTCAAATTTCGTTAAGGATAGGCTGGTAGAGAAGTTGGTAAATGACCCTGCATTCTTGGAGGATCCTGTCCAAGCTTACAATTATGCATTTTTGGCAACGAACCAAGAATTACGTAGTAGTAGTGAGATTGATGATTCTATGAGTGGCACCACCGCGATAACGGTGCTTGTTATTGGTGACACCCTTTATGTTGCTAATGTTGGTGATTCGAGAGCGGTGCTGGCTGTTAAGGATGGGAACCGCATTGTCGCGGAGGATTTGTCTTCTGATCAGACGCCGTTTCGGAAAGATGAATATGAGAGAGTGAAGCTTTGTGGTGCAAGGGTTTTGAGTGTTGATCAGGTGGAAGGGCTCAAGGATCCAGATATCCAGAGTTGGGGTGATGAAGAGAGTCGGGGTGGTGATCCGCCCAGATTGTGGGTTCCTAATGGGATGTATCCTGGAACTGCTTTTACGAGGAGTATAGGGGATAGTTTAGCAGAGACAATTGGTGTCACTGCTCTTCCTGAGGTGAAAACTTTTCAGCTTACACCTGATCATCTTTTCTTTGTGGTGGCAAGTGATGGCATATTTGAATTCCTGACAAGCCAAACTGTCATTGATATGGCAGCAAGCTATATGGATCCTCGCGATGCATGTGCGGCTATTGCAGAAAAGTCATATAAACTATGGTTGGAACTTGAGAACAGAACAGATGATATAACAATTATCATTGTTCAGATCAAAGGTTTCTCTAATTCAGGTACATTCAGAGTTGGATCAGATGACATAAATGTTGGCGCTGTGCTGAATTCCAGGACAGGAACTCCTGAGATACCCGCTGCGCATGAATCTGATGCTGTCAGAACCAGTTTCTCAGAGTTGCACTCTGATCAGCCTGCGGCTTCAGTGGTGGGCCCAGTTCATTCTGCAGAATGTCCAAGACCAATTGAATGA 1251 0.4508 MGCVHGKCCCGEHTSSEDGSRDYRETGFVRSHRKNIIAQRSLKRAPVPSHNFILEYTFLTQRGYYPDSPDKANQDSFCISTNLQGNPNVHFFGVYDGHGQFGSQCSNFVKDRLVEKLVNDPAFLEDPVQAYNYAFLATNQELRSSSEIDDSMSGTTAITVLVIGDTLYVANVGDSRAVLAVKDGNRIVAEDLSSDQTPFRKDEYERVKLCGARVLSVDQVEGLKDPDIQSWGDEESRGGDPPRLWVPNGMYPGTAFTRSIGDSLAETIGVTALPEVKTFQLTPDHLFFVVASDGIFEFLTSQTVIDMAASYMDPRDACAAIAEKSYKLWLELENRTDDITIIIVQIKGFSNSGTFRVGSDDINVGAVLNSRTGTPEIPAAHESDAVRTSFSELHSDQPAASVVGPVHSAECPRPIE 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1615g00004 416 ProSiteProfiles PPM-type phosphatase domain profile. 55 346 IPR001932 -
Vium1615g00004 416 SMART PP2C_SIG_2 74 346 IPR001932 -
Vium1615g00004 416 PANTHER PROTEIN PHOSPHATASE 72 345 IPR015655 GO:0004722|GO:0006470
Vium1615g00004 416 FunFam Phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 50 348 - -
Vium1615g00004 416 ProSitePatterns PPM-type phosphatase domain signature. 91 99 IPR000222 GO:0043169
Vium1615g00004 416 Pfam Protein phosphatase 2C 78 324 IPR001932 -
Vium1615g00004 416 CDD PP2Cc 71 346 IPR001932 -
Vium1615g00004 416 SMART PP2C_4 51 344 IPR001932 -
Vium1615g00004 416 Gene3D - 53 348 IPR036457 -
Vium1615g00004 416 MobiDBLite consensus disorder prediction 396 416 - -
Vium1615g00004 416 SUPERFAMILY PP2C-like 47 348 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1615g00004 Vium-Chr1615 16684 20277 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1615g00004 1 351 PP2C-type Phosphatase Gene Family AT3G06270 69.122 8.37e-174 488
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1615g00004 - - gmx:100797866 716.457