Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1606g00030 ATGGGTCATTTGGGTGTTTCTCACCAAGTCAAGTTCATTGGTCAGCATAAGGAAAATGGAAGTAAACTTTCTTCCAGTATTCCTAAGGTGGAGGAATCAAATGATAAAGAAAATATCACTAAAGGTGAACCTATCTTCATGCCAAAATTTAAAAAAAGAAAACGCCTTAGCCTAAATCGTCTTAGAGAGATTAAAGCGGATATGTGTGCCAGTACAAGGGAAAGTGGCAGCAGCATGCCTGAAACAAAGAGTGAAAACAGAGCTAGGTGGTCAACTAAGAGGTATATGTTGGCTGAGCAAAGCATGTGGGAGGTCTTAAAAGGTGAAGGTGCAACGTTTGAAAATCCAATTACCCGACCTGAATTAAGAATGGCTGTCCGTAAACACATCGGTGATACTGGACTATTAGACCACTTACTGAAGCACATTGATGGTAGATTGGCACCTGGAGGCACTGAGCGATTTCGACGACGTTTCAACACCAAGGGAATCATGGAGTATTGGTCTGAGAGTGCTAATTTGGATGAAATCCACCAGGAGACTGGGATGCAAGACCCTTACCAGATACAACCGTCTAAATTAAGGTCAGGAAGTGTTCCTATGCAGAATGTTGATTCTATTGATGAACTGAAAATGCTCAAAATAGAAATGGCCCAGATGAAGAGGGACATGCAGGAGCTCATTGCAAAAAAGAAAGTAAAGAGGGAAAGGTGTTTGATGGAGGAGACACAGAAAAGTTTTGTGAATTGGAAAGCCATGACTGAGGAGCGTGTAACTGAGATTCTGACTTCTTTGAAGGGTGTGCAGGGCATGAATGAAGACCTTCTGATTTGGAAAACTAAAGTTGAGCAACAGCTTATGGAAATAGCCAATAAATTGAGTGATGGACGAACATTGAGAGAACTCACCACTTCAAATTATCTTCCGGTAAGCTGGGAGGATTGGCTAGAAAGCACCAACCTAGACAATATTCATGGAAATGAATTTTCTCCGTGGTTTGGGAATCCTGAGCTGCTTGATGTTCCACAAGAGATTGTACTTCAAGAGCCGAACTCAGCCCTACCAATTCAGCTGCAAAGTGTAGAACCGACTAACATGAAGAGTGCTTCCCTTATTTCCCCCACTTTTGATTACAGCAATTTGCAAGATTTGGTGCCAAAGAAGATCGATGAATATCAACCTAATGTGATCCCTGATTCTTCTAGGGCTGTTAATTCTAAGTCTGACCTTGACAATTCGTTGATATTGTGTCAGGAAATGTTCTTGGAATTATTTACATCGAGGGATAAAATGGAGCAGCAGTTATTGGAGATATCAAATACTGTATATGGCATGCTGACATCGGAATAG 1350 0.4133 MGHLGVSHQVKFIGQHKENGSKLSSSIPKVEESNDKENITKGEPIFMPKFKKRKRLSLNRLREIKADMCASTRESGSSMPETKSENRARWSTKRYMLAEQSMWEVLKGEGATFENPITRPELRMAVRKHIGDTGLLDHLLKHIDGRLAPGGTERFRRRFNTKGIMEYWSESANLDEIHQETGMQDPYQIQPSKLRSGSVPMQNVDSIDELKMLKIEMAQMKRDMQELIAKKKVKRERCLMEETQKSFVNWKAMTEERVTEILTSLKGVQGMNEDLLIWKTKVEQQLMEIANKLSDGRTLRELTTSNYLPVSWEDWLESTNLDNIHGNEFSPWFGNPELLDVPQEIVLQEPNSALPIQLQSVEPTNMKSASLISPTFDYSNLQDLVPKKIDEYQPNVIPDSSRAVNSKSDLDNSLILCQEMFLELFTSRDKMEQQLLEISNTVYGMLTSE 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1606g00030 449 MobiDBLite consensus disorder prediction 15 35 - -
Vium1606g00030 449 PANTHER PROTEIN DYAD 5 447 IPR044221 GO:0007131|GO:0051177|GO:0051321
Vium1606g00030 449 Coils Coil 210 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1606g00030 Vium-Chr1606 157024 162838 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1606g00030 88 167 PHD Transcription Factor Family AT5G22260 39.506 4.71e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1606g00030 - - pvu:PHAVU_002G279200g 688.723