Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1606g00029 ATGGGTCATTTGGGTGTTTCTCACCAAGTCAAGTTCATTGGTCAGCATAAGGAAAATGGAAGTAAACTTTCTTCCAGTATTCCTAAGGTGGAGGAATCAAATGATAAAGAAAATATCACTAAAGGTGAACCTATCTTCATGCCAAAATTTAAAAAAAGAAAACGCCTTAGCCTAAATCGTCTTAGAGAGATTAAAGCGGATATGTGTGCCAGTACAAGGGAAAGTGGCAGCAGCATGCCTGAAACAAAGAGTGAAAACAGAGCTAGGTGGTCAACTAAGAGGTATATGTTGGCTGAGCAAAGCATGTGGGAGGTCTTAAAAGGTGAAGGTGCAACGTTTGAAAATCCAATTACCCGACCTGAATTAAGAATGGCTGTCCGTAAACACATCGGTGATACTGGACTATTAGACCACTTACTGAAGCACATTGATGGTAGATTGGCACCTGGAGGCACTGAGCGATTTCGACGACGTTTCAACACCAAGGGAATCATGGAGTATTGGTCTGAGAGTGCTAATTTGGATGAAATCCACCAGGAGACTGGGATGCAAGACCCTTACCAGATACAACCGTCTAAATTAAGGTCAGGAAGTGTTCCTATGCAGAATGTTGATTCTATTGATGAACTGAAAATGCTCAAAATAGAAATGGCCCAGATGAAGAGGGACATGCAGGAGCTCATTGCAAAAAAGAAAGTAAAGAGGGAAAGGTGTTTGATGGAGGAGACACAGAAAAGTTTTGTGAATTGGAAAGCCATGACTGAGGAGCGTGTAACTGAGATTCTGACTTCTTTGAAGGGTGTGCAGGGCATGAATGAAGACCTTCTGATTTGGAAAACTAAAGTTGAGCAACAGCTTATGGAAATAGCCAATAAATTGAGTGATGGACGAACATTGAGAGAACTCACCACTTCAAATTATCTTCCGGTAAGCTGGGAGGATTGGCTAGAAAGCACCAACCTAGACAATATTCATGGAAATGAATTTTCTCCGTGGTTTGGGAATCCTGAGCTGCTTGATGTTCCACAAGAGATTGTACTTCAAGAGCCGAACTCAGCCCTACCAATTCAGCTGCAAAGTGTAGAACCGACTAACATGAAGAGCAATTTGCAAGATTTGGTGCCAAAGAAGATCGATGAATATCAACCTAATGTGATCCCTGATTCTTCTAGGGCTGTTAATTCTAAGTCTGACCTTGACAATTCGTTGATATTGTGTCAGCAGGAAATGTTCTTGGAATTATTTACATCGAGGGATAAAATGGAGCAGCAGTTATTGGAGATATCAAATACTGTATATGGCATGCTGACATCGGAATAG 1320 0.4136 MGHLGVSHQVKFIGQHKENGSKLSSSIPKVEESNDKENITKGEPIFMPKFKKRKRLSLNRLREIKADMCASTRESGSSMPETKSENRARWSTKRYMLAEQSMWEVLKGEGATFENPITRPELRMAVRKHIGDTGLLDHLLKHIDGRLAPGGTERFRRRFNTKGIMEYWSESANLDEIHQETGMQDPYQIQPSKLRSGSVPMQNVDSIDELKMLKIEMAQMKRDMQELIAKKKVKRERCLMEETQKSFVNWKAMTEERVTEILTSLKGVQGMNEDLLIWKTKVEQQLMEIANKLSDGRTLRELTTSNYLPVSWEDWLESTNLDNIHGNEFSPWFGNPELLDVPQEIVLQEPNSALPIQLQSVEPTNMKSNLQDLVPKKIDEYQPNVIPDSSRAVNSKSDLDNSLILCQQEMFLELFTSRDKMEQQLLEISNTVYGMLTSE 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1606g00029 439 MobiDBLite consensus disorder prediction 15 35 - -
Vium1606g00029 439 Coils Coil 210 237 - -
Vium1606g00029 439 PANTHER PROTEIN DYAD 5 437 IPR044221 GO:0007131|GO:0051177|GO:0051321
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1606g00029 Vium-Chr1606 157024 162838 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1606g00029 88 167 PHD Transcription Factor Family AT5G22260 39.506 5.17e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1606g00029 - - pvu:PHAVU_002G279200g 692.575