Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1606g00027 ATGGCGGCCAAATCGAGTTCGAGTTCAACAAACGTGACGGTGAAGGCGGCGTGGGTTTTGCCACACAGGACGCAGAACATCCGGGAGGTGTACGAGGTGGGTAGGAAGCTGGGGCAGGGGCAGTTCGGGACGACGTTCCTGTGCACGCGCCGCGCGACTGGGGGAAAGTTCGCGTGCAAGTCGATTCCCAAGCGGAAGCTTCTGTGCAGGGAGGACTACGAGGACGTGTGGCGGGAGATTCAGATAATGCACCACTTGTCAGAGCACGCTAACGTGGTTCGCATCGAGGGCGCGTTCGAGGACTCTTCCGCCGTGCACCTCGTCATGGAGCTCTGCGAGGGCGGCGAGCTCTTCGACCGGATCGTCCAGAAGGGCCACTACAGTGAGAGACAGGCGGCGAGGTTGATAAAGACCATTGTTGAGGTTGTCGAGGCTTGTCACTCGCTTGGAGTCATGCATAGGGACCTCAAGCCAGAAAACTTTCTCTTTGACACTGTTGACGAGGATGCCAAGCTAAAAGCTACCGATTTCGGGTTGTCCGTTTTTTACAAGCCTGGTGAATCGTTTTGCGACGTTGTCGGGAGCCCATACTATGTTGCACCAGAGGTCTTGCGCAAGCTCTATGGGCCTGAATCAGATGTGTGGAGTGCAGGGGTTATTTTGTACATTTTATTGAGTGGGGTGCCACCATTTTGGGCTGAAACTGAACCCGGGATCTTCAAACAGATTTTACTGGGAAAACTTGATTTTCAATCTGAGCCTTGGCCTAGCATTTCAGACAGTGCCAAGGATCTAATTCGGAAAATGCTTGATCAAAATCCAAAAACCAGGCTTACAGCACATGAAGTACTCCGCCACCCATGGATTGTTGATGACAGCATTGCACCAGATAAACCTCTAGATTCTGCAGTTTTATCACGCCTGAAACAGTTCTCTGCAATGAATAAACTGAAAAAGATGGCATTGCGGGTTATTGCCGAGAGGCTGTCTGAAGAAGAAATTGGTGGCCTGAAAGAGTTATTCAAGATGATTGACACTGACAACAGTGGATCCATAACATTTGATGAATTAAAAGACGGCCTGAAGCGAGTAGGATCTGAACTTATGGAGTCTGAAATCAAGGATCTCATGGATGCTGCAGATATTGATAAAAGTGGAACAATAGATTATGGTGAATTTATTGCTGCCACAGTTCATTTAAACAAGCTGGAGAGAGAGGAAAACCTGGTGTCAGCCTTCTCCTATTTTGACAAGGATGGTAGTGGTTACATAACCCTTGATGAGATACAACAAGCTTGTAAGGACTTTGGTTTAGACGATGTTCATATTGATGACATGATCAAGGAAATTGACCAAGATAATGATGGGCAAATAGATTATGGGGAATTCACTGCCATGATGAGAAAGGGCAATGGAGGAATTGGAAGGAGAACAATGAGAAAAACACTGAATTTAAGAGATGCTTTTGGGTTAGTAGACAATGGCTCCAATCAAGTTATTGAGGGCTACTTTAAGTAA 1518 0.4736 MAAKSSSSSTNVTVKAAWVLPHRTQNIREVYEVGRKLGQGQFGTTFLCTRRATGGKFACKSIPKRKLLCREDYEDVWREIQIMHHLSEHANVVRIEGAFEDSSAVHLVMELCEGGELFDRIVQKGHYSERQAARLIKTIVEVVEACHSLGVMHRDLKPENFLFDTVDEDAKLKATDFGLSVFYKPGESFCDVVGSPYYVAPEVLRKLYGPESDVWSAGVILYILLSGVPPFWAETEPGIFKQILLGKLDFQSEPWPSISDSAKDLIRKMLDQNPKTRLTAHEVLRHPWIVDDSIAPDKPLDSAVLSRLKQFSAMNKLKKMALRVIAERLSEEEIGGLKELFKMIDTDNSGSITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTIDYGEFIAATVHLNKLEREENLVSAFSYFDKDGSGYITLDEIQQACKDFGLDDVHIDDMIKEIDQDNDGQIDYGEFTAMMRKGNGGIGRRTMRKTLNLRDAFGLVDNGSNQVIEGYFK 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1606g00027 505 Pfam EF-hand domain pair 407 468 IPR002048 GO:0005509
Vium1606g00027 505 Pfam EF-hand domain pair 337 397 IPR002048 GO:0005509
Vium1606g00027 505 CDD EFh 337 396 IPR002048 GO:0005509
Vium1606g00027 505 ProSiteProfiles EF-hand calcium-binding domain profile. 442 473 IPR002048 GO:0005509
Vium1606g00027 505 ProSitePatterns EF-hand calcium-binding domain. 451 463 IPR018247 -
Vium1606g00027 505 ProSiteProfiles EF-hand calcium-binding domain profile. 368 403 IPR002048 GO:0005509
Vium1606g00027 505 ProSitePatterns EF-hand calcium-binding domain. 417 429 IPR018247 -
Vium1606g00027 505 Gene3D - 330 401 - -
Vium1606g00027 505 ProSiteProfiles EF-hand calcium-binding domain profile. 332 367 IPR002048 GO:0005509
Vium1606g00027 505 ProSiteProfiles EF-hand calcium-binding domain profile. 404 439 IPR002048 GO:0005509
Vium1606g00027 505 ProSiteProfiles Protein kinase domain profile. 31 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1606g00027 505 SMART serkin_6 31 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1606g00027 505 FunFam Calcium-dependent protein kinase SK5 402 497 - -
Vium1606g00027 505 CDD STKc_CAMK 30 288 - -
Vium1606g00027 505 SMART efh_1 408 436 IPR002048 GO:0005509
Vium1606g00027 505 SMART efh_1 442 470 IPR002048 GO:0005509
Vium1606g00027 505 SMART efh_1 336 364 IPR002048 GO:0005509
Vium1606g00027 505 SMART efh_1 372 400 IPR002048 GO:0005509
Vium1606g00027 505 PANTHER SERINE/THREONINE-PROTEIN KINASE 22 463 - -
Vium1606g00027 505 Pfam Protein kinase domain 31 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1606g00027 505 SUPERFAMILY Protein kinase-like (PK-like) 9 312 IPR011009 -
Vium1606g00027 505 Gene3D Phosphorylase Kinase; domain 1 33 117 - -
Vium1606g00027 505 FunFam Calcium-dependent protein kinase 1 33 116 - -
Vium1606g00027 505 ProSitePatterns EF-hand calcium-binding domain. 345 357 IPR018247 -
Vium1606g00027 505 FunFam Calcium-dependent protein kinase SK5 199 294 - -
Vium1606g00027 505 FunFam CDPK-related kinase 3 23 191 - -
Vium1606g00027 505 ProSitePatterns EF-hand calcium-binding domain. 381 393 IPR018247 -
Vium1606g00027 505 Gene3D - 402 505 - -
Vium1606g00027 505 ProSitePatterns Serine/Threonine protein kinases active-site signature. 151 163 IPR008271 GO:0004672|GO:0006468
Vium1606g00027 505 Gene3D Transferase(Phosphotransferase) domain 1 118 329 - -
Vium1606g00027 505 FunFam calcium-dependent protein kinase SK5 326 398 - -
Vium1606g00027 505 ProSitePatterns Protein kinases ATP-binding region signature. 37 60 IPR017441 GO:0005524
Vium1606g00027 505 SUPERFAMILY EF-hand 328 469 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1606g00027 Vium-Chr1606 146492 152279 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1606g00027 19 491 EF-hand Containing Proteins AT1G35670 78.571 0.0 784
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vium1606g00027 Pkinase 1.3e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1606g00027 K13412 - gmx:547825 972.23