Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1605g00004 ATGCCGATGGACCTGTGTGCCCAAATCCAGAGATCCTTCGACCAACGTTACACCTCCCACGCTCGCCACTCGCTCGACGAATTGCCTGACAGCTTCACCATCACTGACCCCCACATCCCGGGCCACCCTATCGTTTTCGCAAGCCCGGGCTTCCTCAAGCTCACGGGCTACGCGCGCTGCGAGGTCCTCGGCCAGACCGCCGCCATCTTCCAGGGCCCGGGCACTTCCCGGAGGTCCGTCATGGAAATCCGCGAGGCCGTCCGAGAGGAGCGCACCGAGCAGGTCGTTTTGCTCAACTACCGTAAGGACGGCACGCCGTTTTGGATGCTATTCCGCGTCTGTCCCGTGTTCAGCGCCGACGGCGGCGCCGTCGTTCATTTCGTCGCTGTTCAGGTCCCGCTTCATAAAATGGACGGCTCCGGCGTCAGGGATTTCGGCTTCGGGTGCTGTCGGAAGGAAGTGTGCACTGATTCGTTATCGGAGCTTGGTCGCGTGTGTTCCGTGGAGCAAGTGTTGGAACGTGATGTCATTGATGCAGAATTGGAGAGGGAAGATCCGTGTGTGGCGAGTGATGAGGAGATGCGAAGTGCCGCCACTGCCATGGACAATATCTTCTCTGTGCTAACCCATTTTAGTGAAGCAACTGGCAGATTTGTGTGTAGGAAGAGGTGCAGCATTCCTGACGTGGGTCTTTTAAGCACATCCTTGATTATTTCTCTTGGTAGAATCAAACAAAGCTTTGTATTAACAAATCCTCATTTATCGGACATGCCTATTGTTTATGCTAGTGATGCCTTCTTGAAATTGACAGGTTATGAAAGAAGTGAAGTTTTGGGTCGCAACTGTAGGTTTTTAGGTGGAACAGATACTGATACCTCTACTTTATATCTGATAAAGGAAAGCATTAAAGCTGAACAACCATGCACAGAAGGACGAAAGTTCATTTTGGAATTTTCTTCACATCTCACCCGTTCGTGA 978 0.5215 MPMDLCAQIQRSFDQRYTSHARHSLDELPDSFTITDPHIPGHPIVFASPGFLKLTGYARCEVLGQTAAIFQGPGTSRRSVMEIREAVREERTEQVVLLNYRKDGTPFWMLFRVCPVFSADGGAVVHFVAVQVPLHKMDGSGVRDFGFGCCRKEVCTDSLSELGRVCSVEQVLERDVIDAELEREDPCVASDEEMRSAATAMDNIFSVLTHFSEATGRFVCRKRCSIPDVGLLSTSLIISLGRIKQSFVLTNPHLSDMPIVYASDAFLKLTGYERSEVLGRNCRFLGGTDTDTSTLYLIKESIKAEQPCTEGRKFILEFSSHLTRS 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1605g00004 325 Gene3D PAS domain 246 314 - -
Vium1605g00004 325 PANTHER PROTEIN TWIN LOV 1 8 310 - -
Vium1605g00004 325 NCBIfam PAS domain S-box protein 43 125 IPR000014 -
Vium1605g00004 325 FunFam Protein TWIN LOV 1 isoform D 31 210 - -
Vium1605g00004 325 Pfam PAS domain 246 303 IPR000014 -
Vium1605g00004 325 Pfam PAS domain 30 131 IPR000014 -
Vium1605g00004 325 CDD PAS 256 285 IPR000014 -
Vium1605g00004 325 ProSiteProfiles PAS repeat profile. 17 90 IPR000014 -
Vium1605g00004 325 SUPERFAMILY PYP-like sensor domain (PAS domain) 248 309 IPR035965 -
Vium1605g00004 325 SUPERFAMILY PYP-like sensor domain (PAS domain) 29 129 IPR035965 -
Vium1605g00004 325 SMART pas_2 19 88 IPR000014 -
Vium1605g00004 325 SMART pas_2 234 307 IPR000014 -
Vium1605g00004 325 CDD PAS 28 130 IPR000014 -
Vium1605g00004 325 ProSiteProfiles PAS repeat profile. 259 281 IPR000014 -
Vium1605g00004 325 Gene3D PAS domain 14 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1605g00004 Vium-Chr1605 12591 16483 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1605g00004 16 314 AGC Kinase Gene Family AT5G58140 30.571 1.11e-43 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1605g00004 - - gmx:100785562 520.39