Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1605g00003 ATGCCGATGGACCTGTGTGCCCAAATCCAGAGATCCTTCGACCAACGTTACACCTCCCACGCTCGCCACTCGCTCGACGAATTGCCTGACAGCTTCACCATCACTGACCCCCACATCCCGGGCCACCCTATCGTTTTCGCAAGCCCGGGCTTCCTCAAGCTCACGGGCTACGCGCGCTGCGAGGTCCTCGGCCAGACCGCCGCCATCTTCCAGGGCCCGGGCACTTCCCGGAGGTCCGTCATGGAAATCCGCGAGGCCGTCCGAGAGGAGCGCACCGAGCAGGTCGTTTTGCTCAACTACCGTAAGGACGGCACGCCGTTTTGGATGCTATTCCGCGTCTGTCCCGTGTTCAGCGCCGACGGCGGCGCCGTCGTTCATTTCGTCGCTGTTCAGGTCCCGCTTCATAAAATGGACGGCTCCGGCGTCAGGGATTTCGGCTTCGGGTGCTGTCGGAAGGAAGTGTGCACTGATTCGTTATCGGAGCTTGGTCGCGTGTGTTCCGTGGAGCAAGTGTTGGAACGTGATGTCATTGAATTGGAGAGGGAAGATCCGTGTGTGGCGAGTGATGAGGAGATGCGAAGTGCCGCCACTGCCATGGACAATATCTTCTCTGTGCTAACCCATTTTAGTGAAGCAACTGGCAGATTTGTGTGTAGGAAGAGGTGCAGCATTCCTGACGTGGGTCTTTTAAGCACATCCTTGATTATTTCTCTTGGTAGAATCAAACAAAGCTTTGTATTAACAAATCCTCATTTATCGGACATGCCTATTGTTTATGCTAGTGATGCCTTCTTGAAATTGACAGGTTATGAAAGAAGTGAAGTTTTGGGTCGCAACTGTAGGTTTTTAGGTGGAACAGATACTGATACCTCTACTTTATATCTGATAAAGGAAAGCATTAAAGCTGAACAACCATGCACAGTACGTATTTTGAATTACAGGAAGGACGAAAGTTCATTTTGGAATTTTCTTCACATCTCACCCGTTCGTGATGCTTCTGGCAAGGTTGCATACTTTGTGGGAGTTCAAATAGAAGACAGCAATAAAAACGACGATAGCCAGTGTTTGAGTCCAGAGAAAAGGCAGCTTAGTGTGGTTGGTGTAGTGAAGGTTGCAGTGAGGAGTTTATCAATGAGTGCGGGATCTTCAAAGTCGTAG 1158 0.5069 MPMDLCAQIQRSFDQRYTSHARHSLDELPDSFTITDPHIPGHPIVFASPGFLKLTGYARCEVLGQTAAIFQGPGTSRRSVMEIREAVREERTEQVVLLNYRKDGTPFWMLFRVCPVFSADGGAVVHFVAVQVPLHKMDGSGVRDFGFGCCRKEVCTDSLSELGRVCSVEQVLERDVIELEREDPCVASDEEMRSAATAMDNIFSVLTHFSEATGRFVCRKRCSIPDVGLLSTSLIISLGRIKQSFVLTNPHLSDMPIVYASDAFLKLTGYERSEVLGRNCRFLGGTDTDTSTLYLIKESIKAEQPCTVRILNYRKDESSFWNFLHISPVRDASGKVAYFVGVQIEDSNKNDDSQCLSPEKRQLSVVGVVKVAVRSLSMSAGSSKS 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1605g00003 385 Pfam PAS domain 244 343 IPR000014 -
Vium1605g00003 385 Pfam PAS domain 30 131 IPR000014 -
Vium1605g00003 385 SUPERFAMILY PYP-like sensor domain (PAS domain) 29 129 IPR035965 -
Vium1605g00003 385 CDD PAS 254 342 IPR000014 -
Vium1605g00003 385 SMART pas_2 19 88 IPR000014 -
Vium1605g00003 385 SMART pas_2 232 305 IPR000014 -
Vium1605g00003 385 FunFam Protein TWIN LOV 1 isoform D 31 208 - -
Vium1605g00003 385 Gene3D PAS domain 14 136 - -
Vium1605g00003 385 SMART pac_2 94 137 IPR001610 -
Vium1605g00003 385 SMART pac_2 307 349 IPR001610 -
Vium1605g00003 385 PANTHER PROTEIN TWIN LOV 1 8 375 - -
Vium1605g00003 385 ProSiteProfiles PAS repeat profile. 257 279 IPR000014 -
Vium1605g00003 385 ProSiteProfiles PAC domain profile. 304 358 IPR000700 -
Vium1605g00003 385 ProSiteProfiles PAS repeat profile. 17 90 IPR000014 -
Vium1605g00003 385 FunFam protein TWIN LOV 1 244 380 - -
Vium1605g00003 385 NCBIfam PAS domain S-box protein 257 342 IPR000014 -
Vium1605g00003 385 NCBIfam PAS domain S-box protein 43 125 IPR000014 -
Vium1605g00003 385 Gene3D PAS domain 244 383 - -
Vium1605g00003 385 CDD PAS 28 130 IPR000014 -
Vium1605g00003 385 SUPERFAMILY PYP-like sensor domain (PAS domain) 246 343 IPR035965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1605g00003 Vium-Chr1605 12238 16418 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1605g00003 16 376 AGC Kinase Gene Family AT5G58140 30.542 1.30e-59 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1605g00003 - - gmx:100785562 663.685