Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1605g00002 ATGCCGATGGACCTGTGTGCCCAAATCCAGAGATCCTTCGACCAACGTTACACCTCCCACGCTCGCCACTCGCTCGACGAATTGCCTGACAGCTTCACCATCACTGACCCCCACATCCCGGGCCACCCTATCGTTTTCGCAAGCCCGGGCTTCCTCAAGCTCACGGGCTACGCGCGCTGCGAGGTCCTCGGCCAGACCGCCGCCATCTTCCAGGGCCCGGGCACTTCCCGGAGGTCCGTCATGGAAATCCGCGAGGCCGTCCGAGAGGAGCGCACCGAGCAGGTCGTTTTGCTCAACTACCGTAAGGACGGCACGCCGTTTTGGATGCTATTCCGCGTCTGTCCCGTGTTCAGCGCCGACGGCGGCGCCGTCGTTCATTTCGTCGCTGTTCAGGTCCCGCTTCATAAAATGGACGGCTCCGGCGTCAGGGATTTCGGCTTCGGGTGCTGTCGGAAGGAAGTGTGCACTGATTCGTTATCGGAGCTTGGTCGCGTGTGTTCCGTGGAGCAAGTGTTGGAACGTGATGTCATTGATGCAGAATTGGAGAGGGAAGATCCGTGTGTGGCGAGTGATGAGGAGATGCGAAGTGCCGCCACTGCCATGGACAATATCTTCTCTGTGCTAACCCATTTTAGTGAAGCAACTGGCAGATTTGTGTGTAGGAAGAGGTGCAGCATTCCTGACGTGGGTCTTTTAAGCACATCCTTGATTATTTCTCTTGGTAGAATCAAACAAAGCTTTGTATTAACAAATCCTCATTTATCGGACATGCCTATTGTTTATGCTAGTGATGCCTTCTTGAAATTGACAGGTTATGAAAGAAGTGAAGTTTTGGGTCGCAACTGTAGGTTTTTAGGTGGAACAGATACTGATACCTCTACTTTATATCTGATAAAGGAAAGCATTAAAGCTGAACAACCATGCACAGTACGTATTTTGAATTACAGGAAGGACGAAAGTTCATTTTGGAATTTTCTTCACATCTCACCCGTTCGTGATGCTTCTGGCAAGGTTGCATACTTTGTGGGAGTTCAAATAGAAGACAGCAATAAAAACGACGATAGCCAGTGTTTGAGTCCAGAGAAAAGGCAGCTTAGTGTGGTTGGTGTAGTGAAGGTTGCAGTGAGGAGTTTATCAATGAGTGCGGGATCTTCAAAGTCGTAG 1164 0.5069 MPMDLCAQIQRSFDQRYTSHARHSLDELPDSFTITDPHIPGHPIVFASPGFLKLTGYARCEVLGQTAAIFQGPGTSRRSVMEIREAVREERTEQVVLLNYRKDGTPFWMLFRVCPVFSADGGAVVHFVAVQVPLHKMDGSGVRDFGFGCCRKEVCTDSLSELGRVCSVEQVLERDVIDAELEREDPCVASDEEMRSAATAMDNIFSVLTHFSEATGRFVCRKRCSIPDVGLLSTSLIISLGRIKQSFVLTNPHLSDMPIVYASDAFLKLTGYERSEVLGRNCRFLGGTDTDTSTLYLIKESIKAEQPCTVRILNYRKDESSFWNFLHISPVRDASGKVAYFVGVQIEDSNKNDDSQCLSPEKRQLSVVGVVKVAVRSLSMSAGSSKS 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1605g00002 387 NCBIfam PAS domain S-box protein 43 125 IPR000014 -
Vium1605g00002 387 NCBIfam PAS domain S-box protein 259 344 IPR000014 -
Vium1605g00002 387 ProSiteProfiles PAC domain profile. 306 360 IPR000700 -
Vium1605g00002 387 FunFam Protein TWIN LOV 1 isoform D 31 210 - -
Vium1605g00002 387 FunFam protein TWIN LOV 1 246 382 - -
Vium1605g00002 387 PANTHER PROTEIN TWIN LOV 1 8 377 - -
Vium1605g00002 387 SMART pac_2 309 351 IPR001610 -
Vium1605g00002 387 SMART pac_2 94 137 IPR001610 -
Vium1605g00002 387 ProSiteProfiles PAS repeat profile. 17 90 IPR000014 -
Vium1605g00002 387 CDD PAS 256 344 IPR000014 -
Vium1605g00002 387 Pfam PAS domain 30 131 IPR000014 -
Vium1605g00002 387 Pfam PAS domain 246 345 IPR000014 -
Vium1605g00002 387 Gene3D PAS domain 14 136 - -
Vium1605g00002 387 SMART pas_2 19 88 IPR000014 -
Vium1605g00002 387 SMART pas_2 234 307 IPR000014 -
Vium1605g00002 387 CDD PAS 28 130 IPR000014 -
Vium1605g00002 387 Gene3D PAS domain 246 385 - -
Vium1605g00002 387 ProSiteProfiles PAS repeat profile. 259 281 IPR000014 -
Vium1605g00002 387 SUPERFAMILY PYP-like sensor domain (PAS domain) 248 345 IPR035965 -
Vium1605g00002 387 SUPERFAMILY PYP-like sensor domain (PAS domain) 29 129 IPR035965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1605g00002 Vium-Chr1605 12238 16453 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1605g00002 16 378 AGC Kinase Gene Family AT5G58140 31.034 2.68e-60 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1605g00002 - - gmx:100785562 659.448