Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1601g00003 ATGTCGTTCCCTCACCACCGTCGAACCCAATCGGAGATGCATTTCCGGATCACCGACGACTTCGACCTCGAGGTCGATCTCTCTCCCCCGCATTTCCAAGATCCCACCCCGCCCAACCAATCCGGACCCAAACCCGAATCTCCGCCGCACGAGACCGCCTGCTCGGGTCACCGGAGGAGTAATTCCGCGGACACCTCTTCCTCCTCGCTGCTCGAAGGCATTGAGGCCAAGAAGGCCTTGTCCCCCGATAAGCTCGCCGAACTCTGGACCGTTGATCCCAAACGTGCCAAGAGGATTCTCGCTAACCGTCAATCCGCGGCGCGCTCCAAAGAGAGGAAAGCTTGTTACGTGTCGGAGCTTGAAAGGAAATTTCAATCCCTTCAAACGGAAGCAACCACTCTCTCTGCTCAATTAAGTCTTTTCCAGAGAGATACAACTGGTCTGAGTTCTGAAAATACGGAGTTGAAGCTTAGGTTACAAGCCATGGAACAACAAGCTAAGTTGTGTGATGCTCTAAATGAAGCACTGAAGAAAGAAGTCAATAGGCTGCGGATTGCAACAGGAGAGATAGCAATGCCCGCTGATAACTATGGCTTGGGAATGCATCAGCTTACATATTCTCAAGGACCGTTCTTCTCACATCATTCACAACAAGGGCAGACTGCATTTCAGGCCACGCAAATGCCGCAGATGCATTCACTCTCATCTAATGTGGCTACTTACAATGAGCCTCTGTTTGATCTAGACATTCCCTATGATATGTCCGAAATGTTGTCGAATGAATCTATCGGGCAGTTTCAGGGGCTGGACATAGGCAACGGGGTTTCTCAGGTTCTGATGCCAGATTATTCCTCCAATTTCTGTTAA 867 0.5029 MSFPHHRRTQSEMHFRITDDFDLEVDLSPPHFQDPTPPNQSGPKPESPPHETACSGHRRSNSADTSSSSLLEGIEAKKALSPDKLAELWTVDPKRAKRILANRQSAARSKERKACYVSELERKFQSLQTEATTLSAQLSLFQRDTTGLSSENTELKLRLQAMEQQAKLCDALNEALKKEVNRLRIATGEIAMPADNYGLGMHQLTYSQGPFFSHHSQQGQTAFQATQMPQMHSLSSNVATYNEPLFDLDIPYDMSEMLSNESIGQFQGLDIGNGVSQVLMPDYSSNFC 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1601g00003 288 MobiDBLite consensus disorder prediction 7 27 - -
Vium1601g00003 288 Coils Coil 117 137 - -
Vium1601g00003 288 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 4 232 - -
Vium1601g00003 288 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 92 155 IPR004827 GO:0003700|GO:0006355
Vium1601g00003 288 SMART brlzneu 90 154 IPR004827 GO:0003700|GO:0006355
Vium1601g00003 288 Coils Coil 159 179 - -
Vium1601g00003 288 MobiDBLite consensus disorder prediction 54 68 - -
Vium1601g00003 288 Pfam bZIP transcription factor 94 152 IPR004827 GO:0003700|GO:0006355
Vium1601g00003 288 FunFam probable transcription factor PosF21 93 146 - -
Vium1601g00003 288 MobiDBLite consensus disorder prediction 1 68 - -
Vium1601g00003 288 MobiDBLite consensus disorder prediction 31 45 - -
Vium1601g00003 288 Gene3D - 93 165 - -
Vium1601g00003 288 SUPERFAMILY Leucine zipper domain 94 148 IPR046347 GO:0003700|GO:0006355
Vium1601g00003 288 CDD bZIP_plant_RF2 95 144 IPR044759 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1601g00003 Vium-Chr1601 18784 22115 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1601g00003 4 271 bZIP Transcription Factor Family AT2G40620 49.688 8.97e-77 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vium1601g00003 bZIP_1 6.7e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1601g00003 - - gmx:100807712 420.624