Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1601g00002 ATGGCCATTGCAGCAACCTCTACCATCTCTCTTCTTTTCTTTCTTCTTAATCTATTCCTCCAAGGCACTTTTGGCGACTATGGAGGTGGATGGCAAGGTGGTCATGCCACATTCTACGGTGGAGGAGATGCCTCAGGCACAATGGGAGGGGCTTGTGGTTATGGAAATTTGTACAGCCAAGGATATGGTACTAACACTGCAGCACTCAGCACTGCTCTATTCAACAATGGCTTGAGTTGTGGGTCTTGCTATGAGATGAAATGTGACAGTGACCCCAGATGGTGCCTCCCCGGTAGCATAATAGTCACTGCCACAAACTTCTGCCCCCCTAACTTTGCATTGGCTAATAACAATGGTGGCTGGTGCAACCCTCCTTTGCAGCACTTCGATCTTGCTGAGCCTGCTTTCTTACAAATTGCTCAATACAAAGCTGGAATTGTCCCTGTTTCTTTCAGAAGAGTATCCTGTGTGAAGAAAGGAGGAATCAGATTCACCATCAATGGTCACTCATACTTCAACTTGGTTCTGATCACAAATGTTGGTGGAGCTGGTGATGTTCATTCTGTGTCCATAAAGGGGTCTAAGACTGGTTGGCAAACCATGTCTAGAAACTGGGGGCAGAATTGGCAAAGCAACTCTTACCTGAATGGTCAAAGCCTCTCTTTTCAGGTGACTGCAAGTGATGGTAGAACTCTCACCAGCAACAACATTGTCCCTGCTAACTGGCAATTTGGTCAAACATTTGAAGGGCAGCAGTTTTAG 762 0.4633 MAIAATSTISLLFFLLNLFLQGTFGDYGGGWQGGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCDSDPRWCLPGSIIVTATNFCPPNFALANNNGGWCNPPLQHFDLAEPAFLQIAQYKAGIVPVSFRRVSCVKKGGIRFTINGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQTMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTLTSNNIVPANWQFGQTFEGQQF 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1601g00002 253 SMART dpbb_1 66 151 IPR007112 -
Vium1601g00002 253 SUPERFAMILY PHL pollen allergen 158 250 IPR036749 -
Vium1601g00002 253 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 49 161 IPR007112 -
Vium1601g00002 253 Pfam Expansin C-terminal domain 162 239 IPR007117 -
Vium1601g00002 253 PRINTS Expansin signature 136 149 IPR002963 GO:0009664
Vium1601g00002 253 PRINTS Expansin signature 160 172 IPR002963 GO:0009664
Vium1601g00002 253 PRINTS Expansin signature 88 99 IPR002963 GO:0009664
Vium1601g00002 253 PRINTS Expansin signature 207 228 IPR002963 GO:0009664
Vium1601g00002 253 PRINTS Expansin signature 119 136 IPR002963 GO:0009664
Vium1601g00002 253 PRINTS Expansin signature 236 252 IPR002963 GO:0009664
Vium1601g00002 253 PRINTS Expansin signature 61 75 IPR002963 GO:0009664
Vium1601g00002 253 PRINTS Expansin signature 100 110 IPR002963 GO:0009664
Vium1601g00002 253 PRINTS Expansin signature 172 193 IPR002963 GO:0009664
Vium1601g00002 253 Gene3D - 21 156 IPR036908 -
Vium1601g00002 253 FunFam Expansin 21 157 - -
Vium1601g00002 253 Pfam Lytic transglycolase 66 151 IPR009009 -
Vium1601g00002 253 Gene3D - 160 253 IPR036749 -
Vium1601g00002 253 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 171 250 IPR007117 -
Vium1601g00002 253 FunFam Expansin 161 253 - -
Vium1601g00002 253 PANTHER EXPANSIN-A15 12 253 IPR002963 GO:0009664
Vium1601g00002 253 CDD DPBB_EXPA_N 35 156 - -
Vium1601g00002 253 SUPERFAMILY Barwin-like endoglucanases 14 179 IPR036908 -
Vium1601g00002 253 PRINTS Expansin/Lol pI family signature 48 66 IPR007118 GO:0005576
Vium1601g00002 253 PRINTS Expansin/Lol pI family signature 30 45 IPR007118 GO:0005576
Vium1601g00002 253 PRINTS Expansin/Lol pI family signature 70 88 IPR007118 GO:0005576
Vium1601g00002 253 PRINTS Expansin/Lol pI family signature 236 250 IPR007118 GO:0005576
Vium1601g00002 253 PRINTS Expansin/Lol pI family signature 198 212 IPR007118 GO:0005576
Vium1601g00002 253 PRINTS Expansin/Lol pI family signature 144 160 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1601g00002 Vium-Chr1601 10882 12600 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1601g00002 10 253 Expansin Gene Family AT2G40610 82.449 1.12e-150 418
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1601g00002 K20628 - gmx:547673 489.574