Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium15g00003 ATGGAGAGTGACGCGAACACCCTCTCTTCCTCTCCCACATTCTCTCATTCCTCTAATACCCTTTCTTCTGCTTCCCCTCCCCAAGTTGTCATGACCCCTTGTGCTGCATGCAAAATCCTTAGACGAAGATGTGCTGAGAAATGTGTGTTGGCACCGTATTTCCCTCCAACCGAACCCGCCAAGTTCACCATTGCTCACCGAGTCTTCGGTGCCAGCAACATCATCAAGTTCTTACAGGAACTTCCAGAGGGTCAGAGAGCTGATGCAGTGGCGAGCATGGTTTACGAGGCTGGTGCAAGAATAAGAGACCCTGTATACGGATCTGCAGGTGCAATTTGCCAGCTCCAAAAGCAAGTGAACGAACTTCAAGCACAGTTAGCAAAGGCACAAGCTGAGGTTGTAAACATGCAATTCCAACAAGCCAATCTCGTGGCTCTAATTTGCATGGAAATGTCACAGACTCCACAGGAATCACCCCAACAATCCCTGGACGATTTCATCGCGAGTCCTTCCCACAGCAGTGGCTATCAGAACAATCTCAGTTTCTTTGAGGATAACACCAACCTAAACTCTTTGTGGGAGCCTCTCTGGACATGA 597 0.4891 MESDANTLSSSPTFSHSSNTLSSASPPQVVMTPCAACKILRRRCAEKCVLAPYFPPTEPAKFTIAHRVFGASNIIKFLQELPEGQRADAVASMVYEAGARIRDPVYGSAGAICQLQKQVNELQAQLAKAQAEVVNMQFQQANLVALICMEMSQTPQESPQQSLDDFIASPSHSSGYQNNLSFFEDNTNLNSLWEPLWT 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium15g00003 198 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 32 158 - -
Vium15g00003 198 Pfam Lateral organ boundaries (LOB) domain 33 130 IPR004883 -
Vium15g00003 198 ProSiteProfiles LOB domain profile. 32 133 IPR004883 -
Vium15g00003 198 MobiDBLite consensus disorder prediction 1 27 - -
Vium15g00003 198 Coils Coil 112 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium15g00003 Vium-Chr15 15874 17142 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium15g00003 28 198 AS2 family AT1G07900 67.241 9.36e-80 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vium15g00003 LOB 1.7e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium15g00003 - - gmx:100819336 318.546