Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium159g00003 ATGAAGTGGCCAACATGGAAGTTCAGCACCATGGTAATGGGTGTGGTGTTCCTTTATCTGAGTTTTTCCTTGGAGGTGTTCTGTGACCCTTCTCATGCAGACAGAATTGCTGAGCTTCCTGGCCAACCCTACGTAGGCTTTCAACAGTTCTCTGGGTATGTCACAGTGGACGACAAGAAACACAAGTCTCTCTTTTACTATTTTGCTGAGTCAGAAACTGATCCAGCTTCAAAGCCTCTTGTTTTGTGGCTCAATGGAGGACCTGGTTGTTCTTCACTGGGAGTGGGAGCATTCTCAGAAAATGGACCTTTCAGACCAAACGGAGAATTTCTGATTAAAAATTATTATAGTTGGAACAAAGAGGCAAACATGCTGTATTTGGAGACACCGGTTGGAGTGGGGTTCTCTTACGCTAAAGGTAGCTCCTCATATATGACAGTGAATGACGAGGCAACAGCCAGGGACAATCTTCTATTCCTGCTACGCTGGTTCAACAAGTTCCCCCAATACAGGACCAGAGATTTGTTTCTAACGGGGGAAAGCTATGCAGGTCATTATGTTCCTCAACTTGCGAAGCTCATGATTGAAATGAACACAAGGAAAAAGATATTCAATCTGAAAGGCATTGCGTTGGGTAATCCAGTTCTAGAATATGCCACTGACTTCAATTCAAGAGCTGAGTTCTTCTGGTCTCATGGACTGATATCAGATTCAACCTACAACATATTCACTACAGTGTGCAACTATTCTAGGTACGTGAGTGAGTACTATAGGGACTCAATTTCGCCTCTTTGTTCAAAGGTTATGGGCCAAGTGAGCAGAGAAACAAGTAAATTTGTGGACAAATATGATGTCACACTTGATGTTTGCATTTCCTCAGTGCTATCACAATCCAAGGTTATTTCTCCTAAAACCCAAGAAGCAAGTGAGAGCATAGATGTGTGTGTGGATGACAAGGTTACAAACTACTTAAACCGGAGAGACGTACAAGAATCACTTCATGCAAAGCTCGTTGGAGTTCGCAAGTGGGATGTTTGCAGCAACGTGCTGAACTATGATATGCTCAACCTGGAAGTGCCTACACTACCTGTTGTTGGATCACTCATAAAAGCTGGAGTCAGGGTCTTAATTTACAGTGGAGATCAAGATTCAGTAATTCCACTGACTGGAAGCCGTACCTTAGTTCAGAAGTTGGCAAGTCAATTAGGACTGAATACAACAGTCCCTTACAGAGTATGGTTTGAAGGTCAGCAGGTTGGTGGGTGGACTCAAGTTCATGGAAATATCCTCTCATTTGCGACTGTTAGAGGTGCCTCCCATGAAGTTCCTTTCTCACAACCTCAAAGATCACTTGTACTATTCAAGTCATTCTTGAAAGGCGTACCTTTACCTGAAGTCTTCTGA 1404 0.4323 MKWPTWKFSTMVMGVVFLYLSFSLEVFCDPSHADRIAELPGQPYVGFQQFSGYVTVDDKKHKSLFYYFAESETDPASKPLVLWLNGGPGCSSLGVGAFSENGPFRPNGEFLIKNYYSWNKEANMLYLETPVGVGFSYAKGSSSYMTVNDEATARDNLLFLLRWFNKFPQYRTRDLFLTGESYAGHYVPQLAKLMIEMNTRKKIFNLKGIALGNPVLEYATDFNSRAEFFWSHGLISDSTYNIFTTVCNYSRYVSEYYRDSISPLCSKVMGQVSRETSKFVDKYDVTLDVCISSVLSQSKVISPKTQEASESIDVCVDDKVTNYLNRRDVQESLHAKLVGVRKWDVCSNVLNYDMLNLEVPTLPVVGSLIKAGVRVLIYSGDQDSVIPLTGSRTLVQKLASQLGLNTTVPYRVWFEGQQVGGWTQVHGNILSFATVRGASHEVPFSQPQRSLVLFKSFLKGVPLPEVF 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium159g00003 467 Gene3D - 361 460 - -
Vium159g00003 467 FunFam Carboxypeptidase 361 460 - -
Vium159g00003 467 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 36 447 IPR001563 GO:0004185|GO:0006508
Vium159g00003 467 Pfam Serine carboxypeptidase 41 460 IPR001563 GO:0004185|GO:0006508
Vium159g00003 467 PRINTS Carboxypeptidase C serine protease (S10) family signature 127 137 IPR001563 GO:0004185|GO:0006508
Vium159g00003 467 PRINTS Carboxypeptidase C serine protease (S10) family signature 114 126 IPR001563 GO:0004185|GO:0006508
Vium159g00003 467 PRINTS Carboxypeptidase C serine protease (S10) family signature 430 443 IPR001563 GO:0004185|GO:0006508
Vium159g00003 467 PRINTS Carboxypeptidase C serine protease (S10) family signature 163 188 IPR001563 GO:0004185|GO:0006508
Vium159g00003 467 ProSitePatterns Serine carboxypeptidases, serine active site. 177 184 IPR018202 GO:0004185
Vium159g00003 467 Gene3D - 315 351 - -
Vium159g00003 467 Gene3D alpha/beta hydrolase 31 292 IPR029058 -
Vium159g00003 467 ProSitePatterns Serine carboxypeptidases, histidine active site. 430 447 IPR033124 GO:0004185
Vium159g00003 467 FunFam Carboxypeptidase 29 464 - -
Vium159g00003 467 SUPERFAMILY alpha/beta-Hydrolases 38 464 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium159g00003 Vium-Chr159 25316 28862 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium159g00003 323 463 Calmodulin-binding Proteins AT2G22960 26.241 8.24e-15 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium159g00003 K16297 - gmx:100795668 886.715