Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium159g00002 ATGGCAAAAGAGCAGCAAAAGCAGGATCCTGGGGCATTCACCGACTCTTTGCAAACCCAAAACCAGGAATTGCAGGGTAAAGGTGAAGTGGAAAAGGAGGAGGCTGAGGCCCCTTTCACTCTCAGCGTCACCTATAAGGTTTTGTACATGTTGGGAGACATCACAGCAGGGCCTGCGTCTATGTTCGCGCAATGGCTCCAATTAGTTCGTAAACGCACTTCCAATCATCGCACTTCTGGCTTCCCTCACCGTTCTTCCACCATGCCTTCTTGCCTGGGAGAATCTATTGAGGATGTGAAAAATGATCAGCAAACAGAAATTAGTTTGTGGGAGAGGCTTGGTAAAGCTGAAATGTTGGACATTGAATCGAGTTCATTTTCTTGGGACAGACTCTCTTCACTTCACCACACTGAACACACTAGCAGCAACGAACATTCTGGGGATGAAATGAACCGAGCTCTCGAGGTAACAGTAAATTCTGGAGGGGTAGTCTTCTTTGCCTTTTTCAACGGTCGTGAGAGTGGTGATGGTTGCTCAAAAGAAGAAACAGCGGTTATAAAGATATCGTCTTCAAGAATGGCAACACAATCCGAACGTCTCGGATATGAATTTGCCAAGTGGTTGGGAGTTCAAACTCCTCAGGCTAGAGTCATCCACAATACCAGTTTAGAGTGGATACAAATAAAGGAAGCTACAGAAAAAGCAAGAGATGCAGCAAGTTCTGCAGGTGATGCAATTGTTGAACTGACATGCACAGAACTTCTGGAAGCACTTGATCTTAGCCGATGTCTCATGTTTATGAGTTATGTGCATGGTTCACCCTTGCTTGAAAGCTCTAGAACTTTTGAGTCACAGGAATATGCAGAAAGAACAGCAGCAGCCCTTGGCAGAGTACTGATGTTGGATCTTGTCATCAGAAATGAAGATAGGCTCCCTTGCCGGCAGCTTAGATGGCGTGGGAACTCTGCAAATTTGTTATTGACTGAAAAAGTAATCTCTGCAAATGTGGATACAATAGGAGAAACCTTTAATTCTGCAGTGAACCGATATGGACCAAGGGTGAGTAGGGCACTTCAAAAAGAGAAAAGGTCAACATCAGTTGATAGTAGAATGAATTCTCATAATTCTGGTTCGGTATCACAATACCCTGGTCTTTCTGACATCAAATACACATCAATACCCACTCACATGAATATGAAAAGTCAAACATCAGGAGAATCAATGCTAACTGACTTTAACATTGTGGCAATTGATTCTGGTGTACCCCGTCGACCCCCTGCTGGAAAGCGTGCAGATGACCAAGTTAATTATCCTAAGTTGGTTGAGTTACTACTGAATAGCTCTGAGTTTTCTTCTAACCTATTACATGATATAACTGGAGGGAGATTAGGATGTCCTCCTCTAGAAGACACCAACACAACAACTGATGTTCACACAGATGATGTAGCAGCACTAGTTCATGAGTTCCGTAATGGTTTTCGTGCCGCTCTTATGGACATGCAGGGATTCCATATATTCCTACTCACACTTCATCAAAAACTTGATAATTTGTTAAGGTTATTTATGAATGCTGTAGGCAAAATATCATCAGGAGAGTCTGAAAAGGAGGATGCAGTGGTTCATGACTTACCTTCACCAGCTTTTACTGGCAGTTGTCTTTCCCCATCTATTAAGGAGAGACATTCTAATGATATTCATCAAGATTGTAGTGATTCAGAATCACAGAGAACTGCTCCAAGGGCATCATCATCTTCAGGCAGTAGAGATTGCTGTGACTCTGCCTCTCCTGCGTCACGAGAAGGTTGGCATGGAAAACACCCTAAAGGAAGTGCGGAGTCACTTCGTTGTTTGCGCTTGACAACTAAGCTTCGTGATTTACATAAATTTGCCAAGGTTGACTCAGAATCTAATAAAGAATTGGAACAATGGAATGAAATGCTAAAAAATGATGCAGTCAAGTTATGCTTGGAGAACAATTTTAACACAGGATTTTTCGAGGGTGGTGATAACAACACCGTTGTTGATGCATACGAACTGAAGGTCAGACTTGAGCATATCCTTGAGAGGATTGCACTGATATCTGAGGCTGCAAATACAGAGAGACCATCTGCTGTTACAAATAGTCTGTTCATTGGTGGAGCGCTGGCTGCAAGATCTACATACACCCTACAACACTTGGGAATTACACATATTTTATGTTTGTGTACAAATGAAATTGGCCAATTAGATTCTCAGTTTCCTGATCTATTCAGATACAAAAATTTCTCTGTGTGTGACGATGAAGATTCTAACATCAGCAGCATATTTGAAGAGGCTTGTGATTTTGTAGATTATGTTGAGAAAGCTGGTCAGAGTGTTTTAGTTCATTGCTTTGAGGGGAAAAGCAGAAGTGCCACTTTGGTCCTCGCTTACCTAATGCTTAGGAAGAAATTCACTTTGTTAGACGCATGGAATGCTCTAAAAGGAGTTCATCGTCGATCTCAGCCCAACAATGGTTTTGAAAAGATCTTACTTGAGCTAGACCAGAAACTGCACGGCAAGGTTTCAATGGAGTGGCAGCAACGGAAACCAATGATGAAAATATGTCCCATCTGTGGCAAGAATGCTGGACTAAGTAGTAGTTCACTTAAACTCCATCTTCAGAAATCACACAAAAAGCTGTCATCAGGGAGTGTGGATAGTGCCATGACAATGGAGATCAAGAAGGCATTAACAGCTTTGAAGATTAGCCGTGGTGGGAGTGTTAGTCCCACACAAAGGCAGTCGCACTCAATGGTTGATACATAA 2787 0.4245 MAKEQQKQDPGAFTDSLQTQNQELQGKGEVEKEEAEAPFTLSVTYKVLYMLGDITAGPASMFAQWLQLVRKRTSNHRTSGFPHRSSTMPSCLGESIEDVKNDQQTEISLWERLGKAEMLDIESSSFSWDRLSSLHHTEHTSSNEHSGDEMNRALEVTVNSGGVVFFAFFNGRESGDGCSKEETAVIKISSSRMATQSERLGYEFAKWLGVQTPQARVIHNTSLEWIQIKEATEKARDAASSAGDAIVELTCTELLEALDLSRCLMFMSYVHGSPLLESSRTFESQEYAERTAAALGRVLMLDLVIRNEDRLPCRQLRWRGNSANLLLTEKVISANVDTIGETFNSAVNRYGPRVSRALQKEKRSTSVDSRMNSHNSGSVSQYPGLSDIKYTSIPTHMNMKSQTSGESMLTDFNIVAIDSGVPRRPPAGKRADDQVNYPKLVELLLNSSEFSSNLLHDITGGRLGCPPLEDTNTTTDVHTDDVAALVHEFRNGFRAALMDMQGFHIFLLTLHQKLDNLLRLFMNAVGKISSGESEKEDAVVHDLPSPAFTGSCLSPSIKERHSNDIHQDCSDSESQRTAPRASSSSGSRDCCDSASPASREGWHGKHPKGSAESLRCLRLTTKLRDLHKFAKVDSESNKELEQWNEMLKNDAVKLCLENNFNTGFFEGGDNNTVVDAYELKVRLEHILERIALISEAANTERPSAVTNSLFIGGALAARSTYTLQHLGITHILCLCTNEIGQLDSQFPDLFRYKNFSVCDDEDSNISSIFEEACDFVDYVEKAGQSVLVHCFEGKSRSATLVLAYLMLRKKFTLLDAWNALKGVHRRSQPNNGFEKILLELDQKLHGKVSMEWQQRKPMMKICPICGKNAGLSSSSLKLHLQKSHKKLSSGSVDSAMTMEIKKALTALKISRGGSVSPTQRQSHSMVDT 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium159g00002 928 Pfam Actin-fragmin kinase, catalytic 106 421 IPR015275 -
Vium159g00002 928 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 770 821 IPR000387 GO:0016311|GO:0016791
Vium159g00002 928 SUPERFAMILY Protein kinase-like (PK-like) 64 434 IPR011009 -
Vium159g00002 928 ProSitePatterns Tyrosine specific protein phosphatases active site. 788 798 IPR016130 GO:0016311|GO:0016791
Vium159g00002 928 MobiDBLite consensus disorder prediction 9 25 - -
Vium159g00002 928 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 701 846 IPR029021 -
Vium159g00002 928 ProSiteProfiles Dual specificity protein phosphatase domain profile. 701 846 IPR020422 GO:0006470|GO:0008138
Vium159g00002 928 MobiDBLite consensus disorder prediction 574 592 - -
Vium159g00002 928 MobiDBLite consensus disorder prediction 563 609 - -
Vium159g00002 928 MobiDBLite consensus disorder prediction 360 381 - -
Vium159g00002 928 CDD DSP 702 839 - -
Vium159g00002 928 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE PHS1 1 927 IPR035010 GO:0004721|GO:0009737|GO:0043622
Vium159g00002 928 Pfam Dual specificity phosphatase, catalytic domain 715 842 IPR000340 GO:0008138|GO:0016311
Vium159g00002 928 Gene3D - 273 384 IPR036940 -
Vium159g00002 928 SMART dsp_5 701 843 IPR020422 GO:0006470|GO:0008138
Vium159g00002 928 FunFam Dual specificity protein phosphatase PHS1 673 847 - -
Vium159g00002 928 Gene3D Protein tyrosine phosphatase superfamily 684 856 IPR029021 -
Vium159g00002 928 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium159g00002 Vium-Chr159 3943 10656 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium159g00002 33 912 Protein tyrosine phosphatase (PTP) family AT5G23720 62.304 0.0 1075
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium159g00002 K14165 - gmx:102661225 1477.23