Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium159g00001 ATGCCTTCTAGCCTGGGAGAATCTATTGAGGATGTGAAAAATGATCAGCAAACAGAAATTAGTTTGTGGGAGAGGCTTGGTAAAGCTGAAATGTTGGACATTGAATCGAGTTCATTTTCTTGGGACAGACTCTCTTCACTTCACCACACTGAACACACTAGCAGCAACGAACATTCTGGGGATGAAATGAACCGAGCTCTCGAGGTAACAGTAAATTCTGGAGGGGTAGTCTTCTTTGCCTTTTTCAACGGTCGTGAGAGTGGTGATGGTTGCTCAAAAGAAGAAACAGCGGTTATAAAGATATCGTCTTCAAGAATGGCAACACAATCCGAACGTCTCGGATATGAATTTGCCAAGTGGTTGGGAGTTCAAACTCCTCAGGCTAGAGTCATCCACAATACCAGTTTAGAGTGGATACAAATAAAGGAAGCTACAGAAAAAGCAAGAGATGCAGCAAGTTCTGCAGGTGATGCAATTGTTGAACTGACATGCACAGAACTTCTGGAAGCACTTGATCTTAGCCGATGTCTCATGTTTATGAGTTATGTGCATGGTTCACCCTTGCTTGAAAGCTCTAGAACTTTTGAGTCACAGGAATATGCAGAAAGAACAGCAGCAGCCCTTGGCAGAGTACTGATGTTGGATCTTGTCATCAGAAATGAAGATAGGCTCCCTTGCCGGCAGCTTAGATGGCGTGGGAACTCTGCAAATTTGTTATTGACTGAAAAAGTAATCTCTGCAAATGTGGATACAATAGGAGAAACCTTTAATTCTGCAGTGAACCGATATGGACCAAGGGTGAGTAGGGCACTTCAAAAAGAGAAAAGGTCAACATCAGTTGATAGTAGAATGAATTCTCATAATTCTGGTTCGGTATCACAATACCCTGGTCTTTCTGACATCAAATACACATCAATACCCACTCACATGAATATGAAAAGTCAAACATCAGGAGAATCAATGCTAACTGACTTTAACATTGTGGCAATTGATTCTGGTGTACCCCGTCGACCCCCTGCTGGAAAGCGTGCAGATGACCAAGTTAATTATCCTAAGTTGGTTGAGTTACTACTGAATAGCTCTGAGTTTTCTTCTAACCTATTACATGATATAACTGGAGGGAGATTAGGATGTCCTCCTCTAGAAGACACCAACACAACAACTGATGTTCACACAGATGATGTAGCAGCACTAGTTCATGAGTTCCGTAATGGTTTTCGTGCCGCTCTTATGGACATGCAGGGATTCCATATATTCCTACTCACACTTCATCAAAAACTTGATAATTTGTTAAGGTTATTTATGAATGCTGTAGGCAAAATATCATCAGGAGAGTCTGAAAAGGAGGATGCAGTGGTTCATGACTTACCTTCACCAGCTTTTACTGGCAGTTGTCTTTCCCCATCTATTAAGGAGAGACATTCTAATGATATTCATCAAGATTGTAGTGATTCAGAATCACAGAGAACTGCTCCAAGGGCATCATCATCTTCAGGCAGTAGAGATTGCTGTGACTCTGCCTCTCCTGCGTCACGAGAAGGTTGGCATGGAAAACACCCTAAAGGAAGTGCGGAGTCACTTCGTTGTTTGCGCTTGACAACTAAGCTTCGTGATTTACATAAATTTGCCAAGGTTGACTCAGAATCTAATAAAGAATTGGAACAATGGAATGAAATGCTAAAAAATGATGCAGTCAAGTTATGCTTGGAGAACAATTTTAACACAGGATTTTTCGAGGGTGGTGATAACAACACCGTTGTTGATGCATACGAACTGAAGGTCAGACTTGAGCATATCCTTGAGAGGATTGCACTGATATCTGAGGCTGCAAATACAGAGAGACCATCTGCTGTTACAAATAGTCTGTTCATTGGTGGAGCGCTGGCTGCAAGATCTACATACACCCTACAACACTTGGGAATTACACATATTTTATGTTTGTGTACAAATGAAATTGGCCAATTAGATTCTCAGTTTCCTGATCTATTCAGATACAAAAATTTCTCTGTGTGTGACGATGAAGATTCTAACATCAGCAGCATATTTGAAGAGGCTTGTGATTTTGTAGATTATGTTGAGAAAGCTGGTCAGAGTGTTTTAGTTCATTGCTTTGAGGGGAAAAGCAGAAGTGCCACTTTGGTCCTCGCTTACCTAATGCTTAGGAAGAAATTCACTTTGTTAGACGCATGGAATGCTCTAAAAGGAGTTCATCGTCGATCTCAGCCCAACAATGGTTTTGAAAAGATCTTACTTGAGCTAGACCAGAAACTGCACGGCAAGGTTTCAATGGAGTGGCAGCAACGGAAACCAATGATGAAAATATGTCCCATCTGTGGCAAGAATGCTGGACTAAGTAGTAGTTCACTTAAACTCCATCTTCAGAAATCACACAAAAAGCTGTCATCAGGGAGTGTGGATAGTGCCATGACAATGGAGATCAAGAAGGCATTAACAGCTTTGAAGATTAGCCGTGGTGGGAGTGTTAGTCCCACACAAAGGCAGTCGCACTCAATGGTTGATACATAA 2526 0.4157 MPSSLGESIEDVKNDQQTEISLWERLGKAEMLDIESSSFSWDRLSSLHHTEHTSSNEHSGDEMNRALEVTVNSGGVVFFAFFNGRESGDGCSKEETAVIKISSSRMATQSERLGYEFAKWLGVQTPQARVIHNTSLEWIQIKEATEKARDAASSAGDAIVELTCTELLEALDLSRCLMFMSYVHGSPLLESSRTFESQEYAERTAAALGRVLMLDLVIRNEDRLPCRQLRWRGNSANLLLTEKVISANVDTIGETFNSAVNRYGPRVSRALQKEKRSTSVDSRMNSHNSGSVSQYPGLSDIKYTSIPTHMNMKSQTSGESMLTDFNIVAIDSGVPRRPPAGKRADDQVNYPKLVELLLNSSEFSSNLLHDITGGRLGCPPLEDTNTTTDVHTDDVAALVHEFRNGFRAALMDMQGFHIFLLTLHQKLDNLLRLFMNAVGKISSGESEKEDAVVHDLPSPAFTGSCLSPSIKERHSNDIHQDCSDSESQRTAPRASSSSGSRDCCDSASPASREGWHGKHPKGSAESLRCLRLTTKLRDLHKFAKVDSESNKELEQWNEMLKNDAVKLCLENNFNTGFFEGGDNNTVVDAYELKVRLEHILERIALISEAANTERPSAVTNSLFIGGALAARSTYTLQHLGITHILCLCTNEIGQLDSQFPDLFRYKNFSVCDDEDSNISSIFEEACDFVDYVEKAGQSVLVHCFEGKSRSATLVLAYLMLRKKFTLLDAWNALKGVHRRSQPNNGFEKILLELDQKLHGKVSMEWQQRKPMMKICPICGKNAGLSSSSLKLHLQKSHKKLSSGSVDSAMTMEIKKALTALKISRGGSVSPTQRQSHSMVDT 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium159g00001 841 FunFam Dual specificity protein phosphatase PHS1 586 760 - -
Vium159g00001 841 Pfam Dual specificity phosphatase, catalytic domain 628 755 IPR000340 GO:0008138|GO:0016311
Vium159g00001 841 Pfam Actin-fragmin kinase, catalytic 19 334 IPR015275 -
Vium159g00001 841 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE PHS1 11 840 IPR035010 GO:0004721|GO:0009737|GO:0043622
Vium159g00001 841 SUPERFAMILY Protein kinase-like (PK-like) 15 347 IPR011009 -
Vium159g00001 841 MobiDBLite consensus disorder prediction 487 505 - -
Vium159g00001 841 MobiDBLite consensus disorder prediction 273 294 - -
Vium159g00001 841 ProSiteProfiles Dual specificity protein phosphatase domain profile. 614 759 IPR020422 GO:0006470|GO:0008138
Vium159g00001 841 SMART dsp_5 614 756 IPR020422 GO:0006470|GO:0008138
Vium159g00001 841 MobiDBLite consensus disorder prediction 476 522 - -
Vium159g00001 841 CDD DSP 615 752 - -
Vium159g00001 841 Gene3D - 186 297 IPR036940 -
Vium159g00001 841 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 683 734 IPR000387 GO:0016311|GO:0016791
Vium159g00001 841 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 614 759 IPR029021 -
Vium159g00001 841 ProSitePatterns Tyrosine specific protein phosphatases active site. 701 711 IPR016130 GO:0016311|GO:0016791
Vium159g00001 841 Gene3D Protein tyrosine phosphatase superfamily 597 769 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium159g00001 Vium-Chr159 3943 12386 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium159g00001 1 825 Protein tyrosine phosphatase (PTP) family AT5G23720 62.919 0.0 1010
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium159g00001 K14165 - gmx:102661225 1345.87