Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1597g00008 ATGCGAACTTCATGGGCTGATTTGGCTGCAAATTCTGCAGCTGAAAATTCGGGTCCCGCTTTTTCTGCTAACAATGTGGGAACTGGTAGCACTGTAGCTCCTTCACGACCAGTTTATGTTCCTCCTCATCTTAGGAACCGCCAGCCATCAGCGGAAGCCCCAGTCCCAGCCCCAGCCCCAGCATACAGTGGTCCTTCTTCTGGTTCTGTTGGCTCTAGTGCTGCTGGTAATTCTGGATCCCGTTGGCCTGCACCCAGAAACGATCATCGTTCTGGGTATGGTGGTGGTGGTGGACGCCCAGGTGGATGGGGAAATAGAAGTGGTGGGTGGGATCGTGGCAGGGAGGTCAACCCCTTTGAAGAAGAGGATAATGCTGAAGACGCATTTGATGAGCAGGAGAATACAGGAATAAATTTTGATGCATATGAGGACATTCCGGTGGAGACCAGTGGTGAAAATGTGCCCCCACCTGTGAATACATTTGCAGAGATTGACTTGGGTGATGCACTTAATCAGAATATAAGAAGGTGCAAATATGTGAAGCCAACACCTGTTCAGCGGCATGCCATACCAATATCCCTAGGTGGACGGGATTTGATGGCTTGTGCACAGACTGGTTCTGGAAAGACAGCTGCATTCTGTTTCCCGATCATCAGTGGAATTATGAGGGGCCAACCTGTCCAGAGGCCACCTCGTGGGGTGCGTACTGTGTATCCACTTGCGCTTGTTCTCTCTCCAACGAGGGAGCTATCAATGCAAATACATGAAGAGGCTAGGAAGTTTTCATTCCAAACTGGTGTTAAGGTGGTTGTTGCTTATGGTGGAGCACCAATAAATCAGCAGCTGCGGGATCTTGAGAGAGGGGTGGACATTCTTGTTGCAACTCCTGGAAGACTGGTAGATTTGCTGGAGAGAGCTAGAGTTTCACTGCAGATGATTCGATATCTGGCCTTAGATGAGGCAGATCGGATGCTAGATATGGGTTTTGAGCCACAAATAAGGAAGATTGTAGAACAAATGGACATGCCTCCACCAGGTGCTAGACAGACTATGTTGTTTAGTGCAACATTTCCGAAAGAGATACAGAGACTGGCTTCTGATTTTCTTTCAAATTATATTTTCCTGGCTGTTGGAAGAGTGGGTTCAAGTACTGATTTAATTGTCCAAAGAGTTGAGTACGTTCAAGAGTCTGACAAGAGAAGTCACCTAATGGACCTTCTTCATGCACAGAGGGCAAATGGTGTACAGGGAAAGCAAGCTTTGACTTTAGTTTTTGTGGAGACAAAGAAGGGAGCTGATTCACTGGAACACTGGTTGTGTCTTAATGGTTTTCCTGCAACTACTATTCATGGTGACAGATCGCAGCAGGAAAGAGAATTAGCATTGAGGTCTTTTAAAAGTGGCAACACCCCCATATTGGTTGCTACCGATGTTGCTGCACGTGGTCTTGATATCCCCCATGTTGCTCATGTAGTCAACTTTGACCTGCCAAATGATATTGATGATTATGTACACCGGATTGGAAGAACAGGGCGAGCTGGAAAGAAAGGCCTTGCAACTGCATTCTTTAATGATAACAATTCATCACTAGCTAGAGCTTTAGCCGATCTGATGCAAGAAGCAAATCAAGAAGTACCTGCTTGGCTCTCTCGGTATGCTGCTCGGTCTTATAGTGGAGGCAGAAACCGCCGATCAGGTGGTCGGTTTGGTAGTCGAGACTTTCGGAGAGAGGGCTCGTTTACAAGGGGTTCTTCAGATTACTACAGTGCTGGAAACAGCAGTGGTGGATATGGAGGTTCTGGGGGATATGCTGGAGGGTATGGTCCCGGCGTCACTAGTGCCTGGGACTGA 1851 0.4765 MRTSWADLAANSAAENSGPAFSANNVGTGSTVAPSRPVYVPPHLRNRQPSAEAPVPAPAPAYSGPSSGSVGSSAAGNSGSRWPAPRNDHRSGYGGGGGRPGGWGNRSGGWDRGREVNPFEEEDNAEDAFDEQENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGDALNQNIRRCKYVKPTPVQRHAIPISLGGRDLMACAQTGSGKTAAFCFPIISGIMRGQPVQRPPRGVRTVYPLALVLSPTRELSMQIHEEARKFSFQTGVKVVVAYGGAPINQQLRDLERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGARQTMLFSATFPKEIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEYVQESDKRSHLMDLLHAQRANGVQGKQALTLVFVETKKGADSLEHWLCLNGFPATTIHGDRSQQERELALRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNDNNSSLARALADLMQEANQEVPAWLSRYAARSYSGGRNRRSGGRFGSRDFRREGSFTRGSSDYYSAGNSSGGYGGSGGYAGGYGPGVTSAWD 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1597g00008 616 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 159 187 IPR014014 GO:0003724
Vium1597g00008 616 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 129 553 - -
Vium1597g00008 616 Pfam Helicase conserved C-terminal domain 399 514 IPR001650 -
Vium1597g00008 616 Gene3D - 114 377 IPR027417 -
Vium1597g00008 616 MobiDBLite consensus disorder prediction 1 32 - -
Vium1597g00008 616 FunFam Probable ATP-dependent RNA helicase DDX4 121 377 - -
Vium1597g00008 616 SMART helicmild6 433 514 IPR001650 -
Vium1597g00008 616 CDD SF2_C_DEAD 387 523 - -
Vium1597g00008 616 MobiDBLite consensus disorder prediction 65 80 - -
Vium1597g00008 616 Gene3D - 378 557 IPR027417 -
Vium1597g00008 616 Pfam DEAD/DEAH box helicase 183 364 IPR011545 GO:0003676|GO:0005524
Vium1597g00008 616 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 240 531 IPR027417 -
Vium1597g00008 616 MobiDBLite consensus disorder prediction 1 132 - -
Vium1597g00008 616 FunFam ATP-dependent RNA helicase RhlB 378 557 - -
Vium1597g00008 616 SMART ultradead3 178 390 IPR014001 -
Vium1597g00008 616 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 386 553 IPR001650 -
Vium1597g00008 616 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 190 375 IPR014001 -
Vium1597g00008 616 CDD DEADc_DDX3_DDX4 160 381 IPR044763 GO:0003724|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1597g00008 Vium-Chr1597 46336 56036 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1597g00008 157 546 Eukaryotic Initiation Factors Gene Family AT3G19760 31.969 5.16e-62 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1597g00008 K11594 - gmx:100795756 1015.76