Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1594g00004 ATGTCCTCAATGGGTGGTTCAGCTGATGAAAATCTTGAAACTAAAGAGACACATGTGAGAAGTTTGTCATCTTCACATGGTCAGGAACCATATGTCCACAAGGTTGGAATTCCTCCGCGGCAAAACCTTTTCAGGGAATTCCAATCCACTGTAAAAGAAACATTTTTCGCAGATGATCCACTACGGTCCTTCAAGGATCAAACTAAGTCCCGGAAGCTGATCCTTGGCATTGAAGCCATATTCCCCATACTTAGTTGGGGGAGAACCTATAATCTCGCAAAATTTAGAGGGGATCTTATTGCTGGTCTAACTATTGCAAGTCTCTGCATTCCTCAGGACATTGGATATGCAAAGCTTGCAAATTTAGATCCAGAGTATGGATTATACTCCAGCTTTGTTCCACCACTGATTTATGCTGTCATGGGTAGTTCTCGTGACATTGCAATAGGACCAGTGGCAGTGGTTTCTCTCTTGCTGGGGACATTACTTCAGAGTGAGATTGATCCTATTGCTAACCCAATAGACTATCGAAGACTTGCTTTTACTGCCACTTTCTTTGCGGGGATTACTCAAGCAACACTTGGGGTTTTAAGATTAGGATTTTTGATTGATTTCCTATCTCATGCTGCAATTGTTGGCTTTATGGGGGGAGCTGCCATCACAATTGCCCTTCAACAGCTTAAGGGCTTCCTTGGGATTCAGAAGTTCACAAAGAAAACTGATGTTATCTCTGTGATGTACTCAGTTCTGTCATCAGCCCATCATGGTTGGAATTGGCAAACTATAGTAATTGGAGCTGTTTTTCTGGCTTTTCTTCTGTTTGCCAAGTATATTGGAAAGAAGAACACGAGATTCTTCTGGGTGCCAGCAATTGCACCGTTGATATCTGTTATTCTCTCTACTCTTTTTGTATACTTAACACGTGCAGACAAGCATGGTGTTGCAATTGTAAAACACATAAAGAGTGGCATCAATCCTTCATCTGTGAAGGAAATTTATTTCACTGGTGATTACCTTGGGAAAGGTTTCAGAATTGGCATCGTGGCTGGCATGATAGCATTGACTGAAGCTACAGCAATTGGAAGAACATTTGCTTCCATGAAGGACTATCAACTGGATGGAAACAAAGAAATGGTGGCATTAGGTGCTATGAATGTTGTTGGTTCATTCACTTCCTGTTATGTGGCAACCGGTTCTTTCTCTCGGTCAGCAGTAAACTACATGGCTGGCTGCGAAACTGCAGTATCTAATATCGTCATGTCTGTTGTTGTGTTCTTAACCTTGGAATTCCTCACACCTCTTTTCGAATACACTCCAAATGCCATTCTTGCTACAATAATTATTTCTGCTGTCATCAACCTTGTGGACTATAAAGCAGCGATTTTGATATGGAAGATTGATAAATTTGACTTTGTTGCTTGCATGGGAGCATTTTTTGGGGTTGTTTTTGCCTCAGTTGAGATAGGACTTTTAATTGCAGTCTCTATATCCTTTGCAAAGATCCTATTACAAGTTACTAGGCCACGAACTGCAATTCTGGGGAAGATCCCTAGGACTACGGTCTATAGAAACATCCAACAATACCCTGAAGCCACAAGGGTTCCTGGTGTACTCATCATCAGAGTTGATTCTGCAATATATTTTTCCAACTCCAACTATGTTAAAGAAAGGATATTAAGATGGCTGATGGATGAGGAAGAACAAGTGAAAGTAGACTACCAAACAAGAATCCAATTTTTGATAGTTGAGATGTCACCTGTCACTGACATAGACACAAGCGGCATCCATGCACTTGAAGAATTATTTAGAAGTCTTCAGAAAAGAGATGTTCAGCTTGTTCTGGCAAACCCTGGGCCAATAGTAATAGACAAGCTCCACACATCAAACTTTGCTGCTTTGCTTGGTGAAGACAAAATCTTCCTCACTGTTGCAGAGGCTGTTGCATACTGTTCTCCAAAGTTGGCTGAGGACCCTTGA 1977 0.4138 MSSMGGSADENLETKETHVRSLSSSHGQEPYVHKVGIPPRQNLFREFQSTVKETFFADDPLRSFKDQTKSRKLILGIEAIFPILSWGRTYNLAKFRGDLIAGLTIASLCIPQDIGYAKLANLDPEYGLYSSFVPPLIYAVMGSSRDIAIGPVAVVSLLLGTLLQSEIDPIANPIDYRRLAFTATFFAGITQATLGVLRLGFLIDFLSHAAIVGFMGGAAITIALQQLKGFLGIQKFTKKTDVISVMYSVLSSAHHGWNWQTIVIGAVFLAFLLFAKYIGKKNTRFFWVPAIAPLISVILSTLFVYLTRADKHGVAIVKHIKSGINPSSVKEIYFTGDYLGKGFRIGIVAGMIALTEATAIGRTFASMKDYQLDGNKEMVALGAMNVVGSFTSCYVATGSFSRSAVNYMAGCETAVSNIVMSVVVFLTLEFLTPLFEYTPNAILATIIISAVINLVDYKAAILIWKIDKFDFVACMGAFFGVVFASVEIGLLIAVSISFAKILLQVTRPRTAILGKIPRTTVYRNIQQYPEATRVPGVLIIRVDSAIYFSNSNYVKERILRWLMDEEEQVKVDYQTRIQFLIVEMSPVTDIDTSGIHALEELFRSLQKRDVQLVLANPGPIVIDKLHTSNFAALLGEDKIFLTVAEAVAYCSPKLAEDP 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1594g00004 658 Gene3D STAS domain 507 654 IPR036513 -
Vium1594g00004 658 PANTHER SULFATE TRANSPORTER 41 651 IPR001902 GO:0016020|GO:0055085
Vium1594g00004 658 ProSiteProfiles STAS domain profile. 527 650 IPR002645 -
Vium1594g00004 658 MobiDBLite consensus disorder prediction 1 33 - -
Vium1594g00004 658 ProSitePatterns SLC26A transporters signature. 124 145 IPR018045 GO:0008271|GO:0008272
Vium1594g00004 658 NCBIfam sulfate permease 82 646 IPR001902 GO:0016020|GO:0055085
Vium1594g00004 658 Pfam STAS domain 528 646 IPR002645 -
Vium1594g00004 658 Pfam Sulfate permease family 95 475 IPR011547 GO:0016020
Vium1594g00004 658 FunFam Sulfate transporter 31 507 653 - -
Vium1594g00004 658 CDD STAS_SulP_like_sulfate_transporter 528 643 - -
Vium1594g00004 658 SUPERFAMILY SpoIIaa-like 529 651 IPR036513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1594g00004 Vium-Chr1594 28239 35676 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1594g00004 1 657 Inorganic Solute Cotransporters AT1G22150 76.560 0.0 1009
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1594g00004 K17470 - gmx:100797668 1205.28