Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium158g00014 ATGGGTTGGTTTAGAAAGTTGCTTAAAGGTTCTGATCATATTTCACGTGGACAATACCAAGGCAAATATGGAGAAGACAGAATTTGGGATACCCATCGTAGTTCAATGGATGATTTAACAGATATAGAGAAAGAAGACATTGACCGTGCAATTGCACTCTCTCTGTCAGAGGAGGATCATCTTAAAGGGAAAAAAGTTGTTGAGGATGACTCTCAGTCTGAAGATGATAAACTCTGTAAAATTGACGATGAGGAAGATGAATATCTTGCTAAAATTCAGCAAGAAGATGAATATCTTGCTAAAATTCAGCAAGAAGAGGATGAACGTCTTGCTAAAATTCAACAAGAACATGAGCGTCTTGCTAAACTTCAACAAGATGAAGATGAACGTTTGGCTAAAATTCAACAAGAACATGAGCGTCTTGCTAAACTTCAACAAGATGAGGATGAACGTCTGGCTAAAATTCAACAAGATGAAGTTGAACATCTTGCTAAAGCTCAACTTGAGGAAGACGAGCAACTTGCTCGGGCAATTCAAGAAAGTTTGACCATTGATTCTCCTCCTCGATCAGACAATGATTCTTCATTTCTATCTTATCCTCACCTCTTTCCCCCTGGATACAGAACCTGTGCTGGGTGCAAGACTGAGATTGGCCATGGAAGATTTTTAAGTTGCATGGGAGGTGTTTGGCATCCAGAATGCTTCTGCTGCCACGCATGTCGTCTGCCAATCACTGATTATGAGTTTTCCATGTCTAGCAATCGCCCTTACCATAAATCATGCTATAGGGAGAAGCATCACCCCAGATGTGATGTTTGCAAGAGCTTTATCCCAACTAATTCATCTGGCCTCATTGAGTATAGAGCTCATCCTTTCTGGCTGCAAAAATACTGCCCATCTCATGAGCTTGATGGCACACCTCGTTGCTGTAGCTGTGAAAGAATGGAGCCAAGGGATGCAAAATATCTTTTGCTTGATGATGGTCGAAAGCTATGTTTAGAGTGTCTAGACTCATCAATTATGGATACTCATGAATGCCAACCTCTCTACCTTGAAATACAAGAATTTTATGAAGGTCTAAATATGAAATTGGAGCAGCAAATTCCAATGCTCTTGGTTGAGAGACAAGCTCTGAATGAGGCCATGGAGGGAGAAAAGAATGGTCATCACCACTTACCTGAAACCAGAGGACTCTGCTTGTCAGAAGAGCAAACTGTAACCACTATTTCAAGGAGGCCGAGGATCGGAGCCGGCTACCGAGTCACAGACATGATAACTGAACCCTTTAAGCTGATCCGTCGCTGTGAAGTGACAGCCATTCTAGTTTTGTATGGCCTTCCTAGGTTGTTAACAGGATCAATCCTAGCTCACGAGATGATGCATGCATGGCTTAGGCTTAAAGGCTATCCTAACCTCAGTCCAGAAGTTGAAGAGGGAATCTGCCAAGTGTTGGCTCATATGTGGTTAGATTCAGAGCTGTATTCGGGATCTGGGAATGGCGGTGCATCATCATCCTCGTCTTCATCTTCATCATCACCTTCCTCCTCTTCTGCATCATCAAAGAAGGGTAAACGTTCAGACTTTGAGAAGAAACTTGGTGAGTTTTTTAAACACCAGATTGAATCAGATACCTCCTCAGCTTATGGAGATGGATTCAGATCGGGTAACAAAGCAATGCTCAAGTATGGGCTCAAAAGCACCCTTGATCATATCCATATGACAGGAAGTTTTCCATACTGA 1740 0.4224 MGWFRKLLKGSDHISRGQYQGKYGEDRIWDTHRSSMDDLTDIEKEDIDRAIALSLSEEDHLKGKKVVEDDSQSEDDKLCKIDDEEDEYLAKIQQEDEYLAKIQQEEDERLAKIQQEHERLAKLQQDEDERLAKIQQEHERLAKLQQDEDERLAKIQQDEVEHLAKAQLEEDEQLARAIQESLTIDSPPRSDNDSSFLSYPHLFPPGYRTCAGCKTEIGHGRFLSCMGGVWHPECFCCHACRLPITDYEFSMSSNRPYHKSCYREKHHPRCDVCKSFIPTNSSGLIEYRAHPFWLQKYCPSHELDGTPRCCSCERMEPRDAKYLLLDDGRKLCLECLDSSIMDTHECQPLYLEIQEFYEGLNMKLEQQIPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVTTISRRPRIGAGYRVTDMITEPFKLIRRCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYPNLSPEVEEGICQVLAHMWLDSELYSGSGNGGASSSSSSSSSSPSSSSASSKKGKRSDFEKKLGEFFKHQIESDTSSAYGDGFRSGNKAMLKYGLKSTLDHIHMTGSFPY 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium158g00014 579 CDD LIM_DA1 210 262 - -
Vium158g00014 579 Pfam Protein DA1 359 574 IPR022087 -
Vium158g00014 579 PANTHER PROTEIN DA1-RELATED 2 124 579 IPR045218 -
Vium158g00014 579 FunFam Protein DA1-related 1 204 263 - -
Vium158g00014 579 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 169 182 IPR003903 -
Vium158g00014 579 SMART uim 42 61 IPR003903 -
Vium158g00014 579 SMART uim 169 188 IPR003903 -
Vium158g00014 579 Gene3D Cysteine Rich Protein 206 268 - -
Vium158g00014 579 MobiDBLite consensus disorder prediction 499 525 - -
Vium158g00014 579 SMART lim_4 209 261 IPR001781 -
Vium158g00014 579 MobiDBLite consensus disorder prediction 499 521 - -
Vium158g00014 579 Pfam LIM domain 210 265 IPR001781 -
Vium158g00014 579 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 202 235 - -
Vium158g00014 579 ProSitePatterns LIM zinc-binding domain signature. 210 244 IPR001781 -
Vium158g00014 579 ProSiteProfiles LIM domain profile. 208 268 IPR001781 -
Vium158g00014 579 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 237 293 - -
Vium158g00014 579 Coils Coil 103 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium158g00014 Vium-Chr158 139517 146027 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vium158g00014 DA1-like 2.6e-105 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium158g00014 - - vum:124826554 1147.5