Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium158g00013 ATGGGTTGGTTTAGAAAGTTGCTTAAAGGTTCTGATCATATTTCACGTGGACAATACCAAGGCAAATATGGAGAAGACAGAATTTGGGATACCCATCGTAGTTCAATGGATGATTTAACAGATATAGAGAAAGAAGACATTGACCGTGCAATTGCACTCTCTCTGTCAGAGGAGGATCATCTTAAAGGGAAAAAAGTTGTTGAGGATGACTCTCAGTCTGAAGATGATAAACTCTGTAAAATTGACGATGAGGAAGATGAATATCTTGCTAAAATTCAGCAAGAAGATGAATATCTTGCTAAAATTCAGCAAGAAGATGAATATCTTGCTAAAATTCAGCAAGAAGAGGATGAACGTCTTGCTAAAATTCAACAAGAACATGAGCGTCTTGCTAAACTTCAACAAGATGAAGATGAACGTTTGGCTAAAATTCAACAAGAACATGAGCGTCTTGCTAAACTTCAACAAGATGAGGATGAACGTCTGGCTAAAATTCAACAAGATGAAGTTGAACATCTTGCTAAAGCTCAACTTGAGGAAGACGAGCAACTTGCTCGGGCAATTCAAGAAAGTTTGACCATTGATTCTCCTCCTCGATCAGACAATGATTCTTCATTTCTATCTTATCCTCACCTCTTTCCCCCTGGATACAGAACCTGTGCTGGGTGCAAGACTGAGATTGGCCATGGAAGATTTTTAAGTTGCATGGGAGGTGTTTGGCATCCAGAATGCTTCTGCTGCCACGCATGTCGTCTGCCAATCACTGATTATGAGTTTTCCATGTCTAGCAATCGCCCTTACCATAAATCATGCTATAGGGAGAAGCATCACCCCAGATGTGATGTTTGCAAGAGCTTTATCCCAACTAATTCATCTGGCCTCATTGAGTATAGAGCTCATCCTTTCTGGCTGCAAAAATACTGCCCATCTCATGAGCTTGATGGCACACCTCGTTGCTGTAGCTGTGAAAGAATGGAGCCAAGGGATGCAAAATATCTTTTGCTTGATGATGGTCGAAAGCTATGTTTAGAGTGTCTAGACTCATCAATTATGGATACTCATGAATGCCAACCTCTCTACCTTGAAATACAAGAATTTTATGAAGGTCTAAATATGAAATTGGAGCAGCAAATTCCAATGCTCTTGGTTGAGAGACAAGCTCTGAATGAGGCCATGGAGGGAGAAAAGAATGGTCATCACCACTTACCTGAAACCAGAGGACTCTGCTTGTCAGAAGAGCAAACTGTAACCACTATTTCAAGGAGGCCGAGGATCGGAGCCGGCTACCGAGTCACAGACATGATAACTGAACCCTTTAAGCTGATCCGTCGCTGTGAAGTGACAGCCATTCTAGTTTTGTATGGCCTTCCTAGGTTGTTAACAGGATCAATCCTAGCTCACGAGATGATGCATGCATGGCTTAGGCTTAAAGGCTATCCTAACCTCAGTCCAGAAGTTGAAGAGGGAATCTGCCAAGTGTTGGCTCATATGTGGTTAGATTCAGAGCTGTATTCGGGATCTGGGAATGGCGGTGCATCATCATCCTCGTCTTCATCTTCATCATCACCTTCCTCCTCTTCTGCATCATCAAAGAAGGGTAAACGTTCAGACTTTGAGAAGAAACTTGGTGAGTTTTTTAAACACCAGATTGAATCAGATACCTCCTCAGCTTATGGAGATGGATTCAGATCGGGTAACAAAGCAATGCTCAAGTATGGGCTCAAAAGCACCCTTGATCATATCCATATGACAGGAAGTTTTCCATACTGA 1770 0.4203 MGWFRKLLKGSDHISRGQYQGKYGEDRIWDTHRSSMDDLTDIEKEDIDRAIALSLSEEDHLKGKKVVEDDSQSEDDKLCKIDDEEDEYLAKIQQEDEYLAKIQQEDEYLAKIQQEEDERLAKIQQEHERLAKLQQDEDERLAKIQQEHERLAKLQQDEDERLAKIQQDEVEHLAKAQLEEDEQLARAIQESLTIDSPPRSDNDSSFLSYPHLFPPGYRTCAGCKTEIGHGRFLSCMGGVWHPECFCCHACRLPITDYEFSMSSNRPYHKSCYREKHHPRCDVCKSFIPTNSSGLIEYRAHPFWLQKYCPSHELDGTPRCCSCERMEPRDAKYLLLDDGRKLCLECLDSSIMDTHECQPLYLEIQEFYEGLNMKLEQQIPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVTTISRRPRIGAGYRVTDMITEPFKLIRRCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYPNLSPEVEEGICQVLAHMWLDSELYSGSGNGGASSSSSSSSSSPSSSSASSKKGKRSDFEKKLGEFFKHQIESDTSSAYGDGFRSGNKAMLKYGLKSTLDHIHMTGSFPY 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium158g00013 589 MobiDBLite consensus disorder prediction 509 531 - -
Vium158g00013 589 Gene3D Cysteine Rich Protein 216 278 - -
Vium158g00013 589 SMART uim 42 61 IPR003903 -
Vium158g00013 589 SMART uim 179 198 IPR003903 -
Vium158g00013 589 PANTHER PROTEIN DA1-RELATED 2 133 589 IPR045218 -
Vium158g00013 589 SMART lim_4 219 271 IPR001781 -
Vium158g00013 589 Pfam Protein DA1 369 584 IPR022087 -
Vium158g00013 589 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 247 303 - -
Vium158g00013 589 Coils Coil 113 161 - -
Vium158g00013 589 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 212 245 - -
Vium158g00013 589 FunFam Protein DA1-related 1 214 273 - -
Vium158g00013 589 ProSitePatterns LIM zinc-binding domain signature. 220 254 IPR001781 -
Vium158g00013 589 Pfam LIM domain 220 275 IPR001781 -
Vium158g00013 589 CDD LIM_DA1 220 272 - -
Vium158g00013 589 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 179 192 IPR003903 -
Vium158g00013 589 MobiDBLite consensus disorder prediction 509 535 - -
Vium158g00013 589 ProSiteProfiles LIM domain profile. 218 278 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium158g00013 Vium-Chr158 139517 146027 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vium158g00013 DA1-like 2.7e-105 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium158g00013 - - vum:124826554 1174.84