Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium158g00011 ATGTCCCAAGATTTTCAACCAGGAATCTTCAGCTTCCCGAATGGGTTGGAGAGAGGAAGGGTGAGTCCACAGCAGCAGATCCGGAGGGACAAAGTAAGGTTGCAAGGAGGGTTCGAGGCAGCGCCATTGGTAGGGATAGAAGAAGAGGAACCGGTGTACGAGACTGCCGGGATGTTGTCGGAGATGTTCAATTTTCCGCATGCGGCTTCGGCTGAATTGATGGAGCAGCAGCCTGTTACGGCCACGTTTAGGGCGGCGAGGCAAGCCGGAGAGTGGTACGGAAACAGACAGCAACAAGGGGTGAATATGATGATGGGTGGATTGGGGGATTCGAAGAACCAAAACGGTGTGAATAACAACCAGCATCAACCACAGCACCAGATTTCAAGCATTAATGCTGACTCAGCAGCTGCCATGCAGCTTTTTCTGATGAACCCTCAAACGAGGTCGCCTTCCCCTCCTCAAAGCCACGCCACTCCTTCTTCAACACTCCACATGTTGCTTCCCAATCCTTCTTCCAATTCCCTCCAAGGTTTCACCGGTTCGGCCGTGGGAGGGTCTTTTGGGCAATTTACATGGGTTCCTGAGAGTGCTCATCAGCAAGGAGGCGTGATGGAAGGGCAAGGTCTTTCGCTATCGTTGTCTTCTTCGCTGGAAGCAGCGAAAGCCGAGGAATTGAGGATGGGGGACAGTGGTTTTCTATATTACAATCATCAACAAGGGGGTGGTGTGGGAGCTGGCGCTTCTTCTTCTTCTTCAACAGTTCAATTTCCGTACAAGAACAACAGTCATCACCAAGCATTGCATTTGCAAGGGGTGATAGGACACGACAACAACCAGCAGGGACATGTTGGGTTCGGGTCATCCTCGTTAGGTGTAGTTAATGTTCTGAGAAACACAAAGTATGTGAAGGCTGCACAAGAGTTGCTCGAAGAGTTTTGCAGTGTTGGGAGGGGTCAGTTTAAGAAGAACAAGTCGAATAGGCAGAATTCAAACCCTAATTCAAATCCCGATGGTGGTGGCGGTGGTTCTTCGCCTTCGTCAAAAGATGCTGGTATTCCTCCTCCTCCTTTGTCAGCCGGTGATAGGATTGAGCATCAGAGAAGGAAGGTCAAACTTCTATCAATGCTGGACGAGGTGGACAGGAGATACAACCATTACTGCGAGCAGATGCAAATGGTGGTGAACTCGTTTGACCTGATGATGGGTTTCGGTGCGGCGGTTCCATACACAGCACTGGCGCAGAAAGCAATGTCTCGGCATTTCCGGTGTCTGAAGGACGCAATAACAGCACAGCTGAAGCAAAGTTGCGAGCTACTAGGAGAGAAAGAAGGGGCGGGGACCTCAGGTTTGACCAAGGGTGAGACCCCAAGGCTTAAGGTTCTTGAGCAAAGCCTAAGACAGCAGAGAGCCTTCCACCAGATGGGGATGATGGAACAAGAAGCTTGGAGACCCCAGAGAGGCTTGCCTGAACGATCTGTCAACATTTTGAGAGCTTGGCTTTTCGAACATTTTCTCCATCCGTATCCAAGCGATGCAGATAAGCATCTGTTGGCACGACAGACTGGACTATCGCGAAATCAGGTATCAAACTGGTTCATTAATGCCAGGGTTCGGTTGTGGAAACCCATGGTGGAAGAGATGTACCAACAAGAACTTAAAGAAACAGAGAGTACAGAAGAGAGAGAAAATAACCAAAGCAACAACAGCAATATCAGTGGGAACCAAGCACAAACTCCAAGCACACCAGGAGCAGCTACGACGTCAACAGCAACAACAGCTGCACCACCAACAATCACAACAACAAAACCAACAGGGAAAAAATCCGATATCAATGCCACCGAAAGCGACTCATCACTTGTTGCAATGAATAGACAGGGCTTCTCGGAAAACCAAGGAAAGCAGTCCACCACCACCTCCACCACTGTCATGGCCTCCGTCAGCGCCACCACCTCTGAGATTGCACCACCCGGGTCACAGTGCTTCGACTCAGATCTGCCCCCACAGAGATTAATGGCCACTGATGACACGTGTCGCTTGGTCACAGCAGATTTTGGGACCGCGTCTGCAAGTGCTGACATTGGATCCACACTCATTAGATTTGGGACCACAGTTGGTGACGTGTCACTCACCCTAGGGCTTCGCCATGCCGGGAACATGCCGGAGAAAGCTCCTTTCTCTGTTAGAGACTTTGGAGCCATTTAA 2205 0.5029 MSQDFQPGIFSFPNGLERGRVSPQQQIRRDKVRLQGGFEAAPLVGIEEEEPVYETAGMLSEMFNFPHAASAELMEQQPVTATFRAARQAGEWYGNRQQQGVNMMMGGLGDSKNQNGVNNNQHQPQHQISSINADSAAAMQLFLMNPQTRSPSPPQSHATPSSTLHMLLPNPSSNSLQGFTGSAVGGSFGQFTWVPESAHQQGGVMEGQGLSLSLSSSLEAAKAEELRMGDSGFLYYNHQQGGGVGAGASSSSSTVQFPYKNNSHHQALHLQGVIGHDNNQQGHVGFGSSSLGVVNVLRNTKYVKAAQELLEEFCSVGRGQFKKNKSNRQNSNPNSNPDGGGGGSSPSSKDAGIPPPPLSAGDRIEHQRRKVKLLSMLDEVDRRYNHYCEQMQMVVNSFDLMMGFGAAVPYTALAQKAMSRHFRCLKDAITAQLKQSCELLGEKEGAGTSGLTKGETPRLKVLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEEMYQQELKETESTEERENNQSNNSNISGNQAQTPSTPGAATTSTATTAAPPTITTTKPTGKKSDINATESDSSLVAMNRQGFSENQGKQSTTTSTTVMASVSATTSEIAPPGSQCFDSDLPPQRLMATDDTCRLVTADFGTASASADIGSTLIRFGTTVGDVSLTLGLRHAGNMPEKAPFSVRDFGAI 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium158g00011 734 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 163 567 - -
Vium158g00011 734 MobiDBLite consensus disorder prediction 146 165 - -
Vium158g00011 734 Pfam Homeobox KN domain 500 539 IPR008422 GO:0003677|GO:0006355
Vium158g00011 734 CDD homeodomain 483 544 IPR001356 GO:0003677
Vium158g00011 734 MobiDBLite consensus disorder prediction 107 127 - -
Vium158g00011 734 MobiDBLite consensus disorder prediction 563 613 - -
Vium158g00011 734 MobiDBLite consensus disorder prediction 321 343 - -
Vium158g00011 734 ProSiteProfiles 'Homeobox' domain profile. 480 543 IPR001356 GO:0003677
Vium158g00011 734 Pfam Associated with HOX 296 430 IPR006563 -
Vium158g00011 734 SMART prehox3 291 431 IPR006563 -
Vium158g00011 734 SUPERFAMILY Homeodomain-like 485 550 IPR009057 -
Vium158g00011 734 Coils Coil 546 566 - -
Vium158g00011 734 SMART HOX_1 483 547 IPR001356 GO:0003677
Vium158g00011 734 FunFam BEL1-like homeodomain protein 4 486 548 - -
Vium158g00011 734 Gene3D - 486 548 - -
Vium158g00011 734 MobiDBLite consensus disorder prediction 551 613 - -
Vium158g00011 734 MobiDBLite consensus disorder prediction 321 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium158g00011 Vium-Chr158 102171 110068 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium158g00011 291 732 Homeobox Transcription Factor Family AT2G23760 55.422 9.57e-152 456
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vium158g00011 POX 1.3e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium158g00011 - - gmx:100786231 1048.5