Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium158g00010 ATGGATGTTGAAGCCTTGAAGAAGCTCAACAAAAACAAGAAATTAGTAAAAAAGCTAGCTAAAAAGTATCATGCGTTTTTGGCCTCTGAAGCCGTTATCAAGCAGATTCCTCGTCTCTTGGGACCTGGTCTCAACAAGGCTGGGAAGTTCCCCACACTTGTGACTCACCAAGAATCTCTCGAGTCAAAGGTTAATGAGACTAAGGCTATGGTCAAATTCCAGCTTAAGAAGGTGCTCTGCATGGGAGTAGCCGTGGGGAATGTTAGCATGGAGGAAAAACAAATCTTCCAAAATGTACAACTGAGCGTCAACTTCCTCGTGTCATTGTTGAAAAAGAACTGGCAGAATGTTAGGTGCTTGTACCTGAAGAGTACCATGGGGAAATCATACCGTGTGTTTTAA 402 0.4303 MDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVSMEEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYLKSTMGKSYRVF 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium158g00010 133 ProSitePatterns Ribosomal protein L1 signature. 33 52 IPR023673 -
Vium158g00010 133 Pfam Ribosomal protein L1p/L10e family 2 127 IPR028364 -
Vium158g00010 133 SUPERFAMILY Ribosomal protein L1 1 133 IPR023674 -
Vium158g00010 133 FunFam Ribosomal protein 1 71 - -
Vium158g00010 133 CDD Ribosomal_L1 23 132 IPR028364 -
Vium158g00010 133 Gene3D - 1 71 IPR016095 -
Vium158g00010 133 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 1 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium158g00010 Vium-Chr158 95504 96516 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium158g00010 1 133 Cytoplasmic Ribosomal Protein Gene Family AT1G08360 92.481 2.80e-74 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium158g00010 K02865 - gmx:100527698 240.736