Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium158g00007 ATGGAAGTGCTTTGTTCTGGTGTTCAATATGCTGGGGAATCTGATTGCACTCAGCAGAGTTCGGGAACTGCTTTTGTATATCAAGAAGAAACTAATTGTGCAGAAAGTGGTGGGCAAGACAAACTGGTAGCTGCTCGGCTGAATGAATCATCACATAAAATGCAGGGACCTCAAATAGAAAGGCAAGGTGGTTTGTCAACTAATTCAGATTGCCAATGCAATGGAGCTTCATGTTGTGACTGTCAACTGGATGATCAAAATGAATATTGTGGTTTCCATGATTTTGAAGAAGACATTATGAATGAACCTTGTTTAACATCTGACAACTCTATCTCTGTTGTTGATACAATTGAAAGTGAATCACCAAACAACAGTCGGGAAGGAGACTTGTCATGTTCTGAACCCAAGTGGCTTGAGGGGGATAGATCAGTGGCATTGTGGGTCAAGTGGAGGGGGAAGTGGCAGGCTGGTATCCGGTGTGCAAGGGCTGACTGGCCCTTATCAACGTTGAAAGCAAAACCAACACATGAAAGAAAGAAATACTTTGTTATATTCTTTCCACACACAAGGATTTATTCTTGGGCAGACATGCTGCTCGTTAGATCAATTAATGAGTTTCCCCATCCCATTGCATATAAGACTCATCAGGTGGGACTCAAAATGGTTAAAGACTTAACTGTTGCACGGCGGTTTATTATGCGAAAGCTAGTTGTTGGCATGCTGAACATGGTCGACCAGTTTCCTTTTAATGCTTTGACAGAAACTGCTCGTGATATGAAGGTCTGGAAGGAGTTTGCCATGGAGGCTTCTCGTTGTAATGGTTATTCTGATTTTGGGAGAATGCTTCTAAAGCTGCATAGTAGCATACTGCAGCACCATATAAATGTTGACTGGTTACGGCACTCTTATACCTCTTGGACTGAAAGATGTCAGAGTGCAAATAGTGCTGACTCAGTGGAGCTACTGAAGGAGGAATTGTTTGATTCTATTTTGTGGAATGGGATCAATACTCTCCCTGATGCACCAGTGCAATCATCATTAAGTTCTGAATGGAAAACCTGGAAGCATGATGTAATGAAATGGTTTATGACACCACCTTCCTTATCGATCAGCAAAGACACACAGCAACAGAGTTATGATGATCTGTTCCAAGCAAACATTCAGGTTTGTAGAAAAAGGGCCAAGCTTGAAGTTCGTCGTGCAGATACACATGCTTCACAAGTGGAAATCAAGGCTCAAACTGTTGCTCTTCAGGCTGACCCTGGCTTCTTTAAGAATCAGGGCATATTGAGCACATTAGCAGATGAGTCTTGCAAACAGGAAGGTGTTAGGGAGATGTCTATGGCAGCTGATTCACCTGGTCAATTGGTCGATAAATGGAATGGAATTGTAGTTGAGAATACTGATTCCCATTTTTTGCATACCAAAGAATTAACACCTTCAAAGGAAATGACTGTTGCGAAATCTGTAGAATTTGGTAGTAAGAATCGACAATGTATAGCTTATATTGAAGCAAAGGGAAGACAGTGTGTGAGATGGGCAAATGACGGTGATGTGTACTGTTGTGTACATTTATCTTCCCGATTTTTGGAGAGCTCAACGAAATCTGAAAAACCTGTTCCACTTGATACTCCTATGTGTGAAGGTACTACTGTTCTGGGTACTAGATGTAAGCATCGTGCCCTACCTGGCTCTTTATTCTGTAAGAAACACCGGCCACATGCTGAAACAGAGCAGATCTCAAATATACCGCAGAATAGACTAAAGAGAAAACATGAAGAAAATTATACTGGTTCAGAGGGCATTCTCTCGAGAGAATTGGTATTAGTCAATGTTGAAAGTCCACTGCAAATGGATCCAGTGTCATCCATTGGTGGTGATTCCCTACATGGAGAAAACAACTCTAATGAGAAGCCCATTCATTCTGAACATGATCATAATGCAATGGAGTCACTGCAGTGTATAGGTTCCCCTCCCTATGATAAGATGAATCCTTGCACGGAAGGTCCTAAACGGTATTGCTTGTATTGCGAAAGTCACCTCCCTAGTTGGCTTAAGCGTGCAAGAAATGGCAAGAGTAGAATAGTATCAAAAGAAGTGTTCACAGAACTTTTGAGGGACTGCAACTCATGGGAGCAAAAGGTACATCTGCATAAAGCATGTGAACTTTTTTACAGGCTTCTTAAAAGCATTTTGTCATTAAGAAACCCTGTTCCTAAGGATGTCCAATTTCAGTGGGCTCTGACTGAAGCTTCTAAAGATTCTAGTGTAGGAGAGTTTTTTAAAAAATTAGTTCACAGTGAAAAGGCCAGAATCAAATCATTATGGGGATTCAATGATGACATGGATATATCTTCTGTTATGGAAGAACCTCCTCTCTTGCCATCCACAAACGATGATTACTATGATAAGGAAAATGCCATTAAGTGTAAGCTATGCTCTGCAGAATTTCCTGATGACCAAGAGCTTGGTAACCATTGGATGGACAGTCATAAAAAGGAGGCGCAGTGGCTATTTAGAGGCTATGCATGTGCAATTTGTCTGGATTCATTTACTAACAAGAAACTGTTGGAAACACATGTTCAGGAGAGACACCATGTGCAATTTGTTGAACAATGCATGCTTCTCCAATGCATCCCTTGTGGGAGTCATTTTGGAAATACCGAACAATTATGGCAGCATGTTTTATCAGTTCATCCTGTTGATTTTAAACCATCAAAAGCTCCTGAGCAGCAAACTTTATCTACTGGTGAAGATTCTCCAGTAAAACGTGATCAGGGTAATTCAGCCCCTTTGGAGAATAATTCTGAGAATACAGGTGGTTTTCGGAAATTTGTTTGCAGGTTTTGCGGGTTGAAATTTGATTTACTACCTGACCTAGGTCGACATCACCAAGCTGCTCATATGGGGCCTAATCTGGCCAGCAGTCGCCCTGCAAAGAGAGGAGTTCGATATTATGCTTACAGATTAAAATCTGGCAGACTTAGCCGCCCCAGATTTAAAAAAAGTTTGGCAGCAGCATCATACAGGCTTAGAAATAAGGCTAATGCTAATTTAAAGCGAAGCATTCAGGAAACAAATTCACATGGCACAGGGGGAATAATAGTACAACCTCATGTTACTGAAACAACAAACATTGGTAGATTGGCTGAACATCAATGCTCAGCTGTTTCAAAGATTTTGTTTTCAGAGATTCAGAAGACGAAACCTCGTCCAAACCATTTTGATATTTTATCAATTGCTCGCTCTGCTTGCTGCAAAGTTAGTCTTGTAGCGTCATTGGAGGAGAAATATGGAATTCTTCCTGAAAAGCTCTATTTGAAGGCAGCAAAACTTTGCAGTGAGCATAATATTTTGGTAAGTTGGCATCAGGACGGTTTTATTTGTCCTAGTGGTTGTAATGTATCAAAGGCTCAAGTTTTGCTCTCTCCTTTAGAGTCTCTTCCTAATAGTTCTGTAATGTCCAAAGCTGGGAATTCATCTGATCCTACAAGTGACGAGTGGGAGGTGGATGAATTTCACTGCATCATCAATTCACGTACTTTAAAGTTAGGTTCACTGCAAAAAGCTGTGGTCTTGTGTGATGACATTAGCTTTGGGAAGGAATCAATTCCAGTGATTTGTGTTGTAGATCAAGAACTTGTGCATTCTCTTCATATCAATAATGGCTGTAATGGACAAAATATAAACCCTTCTAGGCCTTGGGAGAGCTTTACCTATGTTACAAAGCCAATGCTCGATCAATCCCTCATTCTTGATTCAGAGAGTCTGCAACTGGGATGTGCCTGTCCATACACCACCTGCAGTCCTGAAACATGTGATCATGTTTACCTTTTTGGCAATGACTATGATGATGCAAAAGACATATTTGGGAAACCAATGCGTGGCAGGTTCCCATATGATGAGAATGGTCGAATAATCCTGGAGGAAGGTTATCTTGTCTACGAGTGTAATCACATGTGCAGATGCAATAAATCCTGTCCAAATAGAGTATTGCAGAATGGTGTACGAGTCAAATTGGAAGTCTTTAAAACAGAGAAAAAGGGATGGGCAGTAAGGGCTGGTGAAGCTATTCTACGTGGCACATTTGTGTGTGAATATATTGGAGAAGTTTTAGATGTGAAAGAGGCACATGATAGGCGTAGAAGTTATGGCACAGAGCATTGCAGTTATTTCTACGACATTGATGCTCGTGTTAATGATATGAGCAGATTGATTGAAGGAGAGGCTCAGTATGTAATTGATGCCACTAAATTTGGAAATGTTTCAAGATTCATCAATCATAGTTGCACCCCAAATCTGGTCAATCACCAAGTTCTTGTAGAGAGCATGGATTCTGAACGTGCACATATCGGTTTTTATGCAAATCGGGATATTGCTTTAGGTGAAGAGCTAACATATGACTATCAGTACGAGCATGTGCTTAGTGAAGGATCTCCTTGTCTTTGCGAATCCTTGAAGTGTAGGGGGCGCCTTTATTAG 4482 0.4096 MEVLCSGVQYAGESDCTQQSSGTAFVYQEETNCAESGGQDKLVAARLNESSHKMQGPQIERQGGLSTNSDCQCNGASCCDCQLDDQNEYCGFHDFEEDIMNEPCLTSDNSISVVDTIESESPNNSREGDLSCSEPKWLEGDRSVALWVKWRGKWQAGIRCARADWPLSTLKAKPTHERKKYFVIFFPHTRIYSWADMLLVRSINEFPHPIAYKTHQVGLKMVKDLTVARRFIMRKLVVGMLNMVDQFPFNALTETARDMKVWKEFAMEASRCNGYSDFGRMLLKLHSSILQHHINVDWLRHSYTSWTERCQSANSADSVELLKEELFDSILWNGINTLPDAPVQSSLSSEWKTWKHDVMKWFMTPPSLSISKDTQQQSYDDLFQANIQVCRKRAKLEVRRADTHASQVEIKAQTVALQADPGFFKNQGILSTLADESCKQEGVREMSMAADSPGQLVDKWNGIVVENTDSHFLHTKELTPSKEMTVAKSVEFGSKNRQCIAYIEAKGRQCVRWANDGDVYCCVHLSSRFLESSTKSEKPVPLDTPMCEGTTVLGTRCKHRALPGSLFCKKHRPHAETEQISNIPQNRLKRKHEENYTGSEGILSRELVLVNVESPLQMDPVSSIGGDSLHGENNSNEKPIHSEHDHNAMESLQCIGSPPYDKMNPCTEGPKRYCLYCESHLPSWLKRARNGKSRIVSKEVFTELLRDCNSWEQKVHLHKACELFYRLLKSILSLRNPVPKDVQFQWALTEASKDSSVGEFFKKLVHSEKARIKSLWGFNDDMDISSVMEEPPLLPSTNDDYYDKENAIKCKLCSAEFPDDQELGNHWMDSHKKEAQWLFRGYACAICLDSFTNKKLLETHVQERHHVQFVEQCMLLQCIPCGSHFGNTEQLWQHVLSVHPVDFKPSKAPEQQTLSTGEDSPVKRDQGNSAPLENNSENTGGFRKFVCRFCGLKFDLLPDLGRHHQAAHMGPNLASSRPAKRGVRYYAYRLKSGRLSRPRFKKSLAAASYRLRNKANANLKRSIQETNSHGTGGIIVQPHVTETTNIGRLAEHQCSAVSKILFSEIQKTKPRPNHFDILSIARSACCKVSLVASLEEKYGILPEKLYLKAAKLCSEHNILVSWHQDGFICPSGCNVSKAQVLLSPLESLPNSSVMSKAGNSSDPTSDEWEVDEFHCIINSRTLKLGSLQKAVVLCDDISFGKESIPVICVVDQELVHSLHINNGCNGQNINPSRPWESFTYVTKPMLDQSLILDSESLQLGCACPYTTCSPETCDHVYLFGNDYDDAKDIFGKPMRGRFPYDENGRIILEEGYLVYECNHMCRCNKSCPNRVLQNGVRVKLEVFKTEKKGWAVRAGEAILRGTFVCEYIGEVLDVKEAHDRRRSYGTEHCSYFYDIDARVNDMSRLIEGEAQYVIDATKFGNVSRFINHSCTPNLVNHQVLVESMDSERAHIGFYANRDIALGEELTYDYQYEHVLSEGSPCLCESLKCRGRLY 1493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium158g00007 1493 Pfam Pre-SET motif 1198 1330 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vium158g00007 1493 SMART set_7 1338 1476 IPR001214 GO:0005515
Vium158g00007 1493 ProSiteProfiles Pre-SET domain profile. 1259 1335 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vium158g00007 1493 SMART preset_2 1194 1322 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vium158g00007 1493 Pfam SET domain 1349 1469 IPR001214 GO:0005515
Vium158g00007 1493 MobiDBLite consensus disorder prediction 908 936 - -
Vium158g00007 1493 ProSitePatterns Zinc finger C2H2 type domain signature. 947 968 IPR013087 -
Vium158g00007 1493 SUPERFAMILY SET domain 1186 1483 IPR046341 -
Vium158g00007 1493 ProSitePatterns Zinc finger C2H2 type domain signature. 878 899 IPR013087 -
Vium158g00007 1493 ProSiteProfiles Post-SET domain profile. 1477 1493 IPR003616 -
Vium158g00007 1493 MobiDBLite consensus disorder prediction 623 642 - -
Vium158g00007 1493 SMART c2h2final6 945 968 IPR013087 -
Vium158g00007 1493 SMART c2h2final6 876 899 IPR013087 -
Vium158g00007 1493 SMART c2h2final6 808 831 IPR013087 -
Vium158g00007 1493 SMART c2h2final6 842 865 IPR013087 -
Vium158g00007 1493 ProSitePatterns Zinc finger C2H2 type domain signature. 810 831 IPR013087 -
Vium158g00007 1493 Gene3D Classic Zinc Finger 795 868 - -
Vium158g00007 1493 ProSiteProfiles Zinc finger C2H2 type domain profile. 945 973 IPR013087 -
Vium158g00007 1493 MobiDBLite consensus disorder prediction 906 936 - -
Vium158g00007 1493 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 5 1493 - -
Vium158g00007 1493 ProSiteProfiles SET domain profile. 1338 1470 IPR001214 GO:0005515
Vium158g00007 1493 ProSiteProfiles Zinc finger C2H2 type domain profile. 842 865 IPR013087 -
Vium158g00007 1493 Gene3D SET domain 1176 1477 IPR046341 -
Vium158g00007 1493 Pfam Zinc finger C2H2-type, 3 repeats 844 969 IPR040689 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium158g00007 Vium-Chr158 54312 68048 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium158g00007 99 1492 C2H2 Transcription Factor Family AT2G23740 51.441 0.0 1392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium158g00007 Pre-SET 8.4e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium158g00007 - - gmx:100786757 2668.65