Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1587g00003 ATGTCAGATGATCAGTTTCAAGCAAGTGGAAACTGGTGGGAATCAGCAAGAAACGTGAGGTTTGAGAGTGGTGAAACGCAGTCTTCTTCTTCTGGCCTCACCAACATGGGAAACTATGCTTGGCAGCAAGACATGGCTAGGTCTTCTTCCATGGATAACTCTGCCTCAGGAGGTTCCTCTGTGGTTTTCCATGACCAGAAGCAGCTTCAAGTTCAGCCACATCATGACTCATCAGCCACAAATCCCACCAATGACCATCCCAACTTGCACATGATGGGCTTGGGCCTCTCATCCCAAGCCATGGACTGGAATCAAGCATCTTTGCAGCTACGAGGTGAGAAGGATTCTGAAGGCAGTTTCAGGTCGATGTTGCAAGAGAATTTGAGCTCTCCAGGCACCACGTTTCAGCAAGAAAGCGGGAATAACAATATTGCGTTGTCTCATCATCAACAAGTTCATTGGAGTCCAGAAAAATTGTTCTCTGCGGAGTCATCAAGCAATGAATTCAAGAGGGGTTTCTCCTTGGACCAAACACAGTTCAGTCCTCAATATAGCTCTGGGGACAGCACTGTCACAAGCCAAGGTTTGCCTTGTTCTTTTCAGATGGATTATGTCGGTAACCCTTCTTCAATATTGCAAGGACTTTTGGGACACGAGAGCAATAACCAACAACCCCACCAAGGTGGTAGTGCTTCTTTTGAGAATCGTTCCATGAATTTTCCTTACTCAGCAACAAGCTATGGATTAAGCTCAAACATTGAGTTAGTGCCTTCTTGGTCAAAGGTGCCTCAGTTCTTAAGAGCTTCACCACCAAAACAACTACCCAATAACCAGTTGCATTTCACCAACAACGCTCCCTTTTGGAACGCTAATTCTGAACCTGCTATAAAGGAGGCTCGATCCAGCTTCATCTCCTCTTTGCAAACCCCCTTCTCGCCATCAAATTTCGATGTTCAATCAAAGAATCTATCTGAAGTTAGGGAGTCGGGTGTGGTGAAGAAAAGTGGGAGTGAAACAGCACCAAAAAGGCCCAGGAACGAAAACCCATCTCCTTTGCCAGCTTTTAAGGTGAGAAAAGAGAAGATGGGGGACAGAATCACTGCACTCCAACAATTGGTTTCACCTTTCGGAAAGACTGATACAGCGTCAGTGCTCTCTGAAGCCATTGAATACATCAAATTCCTCCATGAACAAGTCACCGTTTTAAGCACCCCCTATATGAAAACCGGTGCTCCCATACAGCATCAGCAGAGTTCTGGTAAATCGAAGGAATCTGAGGGTCCAAAGCAAGATCTTAGAAGCCGAGGGCTATGTTTGGTGCCAGTTTCTAGTACATTTCCAGTGACTCATGAACCCACAGTTGAATATTGGACACCAACGTTTGGAGGAACTTACAGATAG 1401 0.4568 MSDDQFQASGNWWESARNVRFESGETQSSSSGLTNMGNYAWQQDMARSSSMDNSASGGSSVVFHDQKQLQVQPHHDSSATNPTNDHPNLHMMGLGLSSQAMDWNQASLQLRGEKDSEGSFRSMLQENLSSPGTTFQQESGNNNIALSHHQQVHWSPEKLFSAESSSNEFKRGFSLDQTQFSPQYSSGDSTVTSQGLPCSFQMDYVGNPSSILQGLLGHESNNQQPHQGGSASFENRSMNFPYSATSYGLSSNIELVPSWSKVPQFLRASPPKQLPNNQLHFTNNAPFWNANSEPAIKEARSSFISSLQTPFSPSNFDVQSKNLSEVRESGVVKKSGSETAPKRPRNENPSPLPAFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKFLHEQVTVLSTPYMKTGAPIQHQQSSGKSKESEGPKQDLRSRGLCLVPVSSTFPVTHEPTVEYWTPTFGGTYR 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1587g00003 466 CDD bHLH_AtbHLH_like 352 403 IPR045239 -
Vium1587g00003 466 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 346 395 IPR011598 GO:0046983
Vium1587g00003 466 SMART finulus 357 401 IPR011598 GO:0046983
Vium1587g00003 466 Gene3D - 356 418 IPR036638 GO:0046983
Vium1587g00003 466 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 136 447 - -
Vium1587g00003 466 MobiDBLite consensus disorder prediction 411 434 - -
Vium1587g00003 466 MobiDBLite consensus disorder prediction 69 92 - -
Vium1587g00003 466 MobiDBLite consensus disorder prediction 69 87 - -
Vium1587g00003 466 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 356 414 IPR036638 GO:0046983
Vium1587g00003 466 FunFam Transcription factor bHLH123 family 356 418 - -
Vium1587g00003 466 MobiDBLite consensus disorder prediction 325 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1587g00003 Vium-Chr1587 29267 33446 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1587g00003 111 466 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G20640 44.557 3.83e-76 242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1587g00003 - - gmx:100818424 757.288