Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1580g00002 ATGGAAATGCCTTGTTTCCCTCCCACTACTATGGCAGCTCTCGCAACCTCACACAGAACACTTAGCACACAACTTTTAATCCCTCAAAGTTATAACAGAGAAAGTTTAAACTACTATGATGGAGAAAATGCAGATCCTCGAACCCTCGACCTATTTCCACATAAGAATGATGACCAAGATGGCATTTGTCTTGCTGAGAGGAAATCCATGTTCTGTGCCAGTAATGCAGCAGAGGAAGGGACAAATAACACAGGGTCCCATGTTCAGTCCCAGCAAAGCACAAGGTGGAGTCCAACGCCAGTTCAGTTACTGGTCCTTGAGGAATTGTATAGGCAAGGCACTAAAACACCATCAGCTGAACAGATTCAGCAAATAGCTTCACAGTTGCGGCAGTTTGGGAAGATTGAAGGGAAGAACGTGTTCTACTGGTTCCAGAATCACAAGGCGAGAGAGAGACAGAAGAGGCGCCGCAGGGAGATGGAGGAAAATAATGCTGCTTCTTCTAGCGAAGGGTTGAAAGAGACAGGTTGTGGAGTTAAAGAGACAAAGAAGTGGGCATCCACTTCAAACTGCAGTCTACATGCAGAGGAATCTGCCGCACTGGATATAGCAGAAAAAGGCTCTAATGGGTGGACTCAGTTTGAGGAGAGAGGCATACAAGTTTTGAGGAGAAACATATCAGAAAGAAGGTTGCAATTGCAAGATAACATGGAAATGCCTTGTTTCCCTCCCACTACTATGGCAGCTCTCGCAACCTCACACAGAACACTTAGCACACAACTTTTAATCCCTCAAAGTTATAACAGAGAAAGTTTAAACTACTATGATGGAGAAAATGCAGATCCTCGAACCCTCGACCTATTTCCACATAAGAATGATGACCAAGATGGCATTTGTCTTGCTGAGAGGAAATCCATGTTCTGTGCCAGTGCTTCTATGGACACTGATATCACCTCCAGCCAGTTTTTTGAGTTTCTTCCTTTAAGAAACTGA 993 0.4431 MEMPCFPPTTMAALATSHRTLSTQLLIPQSYNRESLNYYDGENADPRTLDLFPHKNDDQDGICLAERKSMFCASNAAEEGTNNTGSHVQSQQSTRWSPTPVQLLVLEELYRQGTKTPSAEQIQQIASQLRQFGKIEGKNVFYWFQNHKARERQKRRRREMEENNAASSSEGLKETGCGVKETKKWASTSNCSLHAEESAALDIAEKGSNGWTQFEERGIQVLRRNISERRLQLQDNMEMPCFPPTTMAALATSHRTLSTQLLIPQSYNRESLNYYDGENADPRTLDLFPHKNDDQDGICLAERKSMFCASASMDTDITSSQFFEFLPLRN 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1580g00002 330 Gene3D - 77 168 - -
Vium1580g00002 330 Pfam Homeodomain 93 153 IPR001356 GO:0003677
Vium1580g00002 330 MobiDBLite consensus disorder prediction 151 174 - -
Vium1580g00002 330 ProSiteProfiles 'Homeobox' domain profile. 89 154 IPR001356 GO:0003677
Vium1580g00002 330 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 77 324 IPR044555 GO:0003700|GO:0099402
Vium1580g00002 330 SUPERFAMILY Homeodomain-like 87 157 IPR009057 -
Vium1580g00002 330 Coils Coil 150 170 - -
Vium1580g00002 330 SMART HOX_1 91 158 IPR001356 GO:0003677
Vium1580g00002 330 CDD homeodomain 94 149 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1580g00002 Vium-Chr1580 13706 18886 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1580g00002 82 330 Wox Gene Family AT3G18010 33.115 3.90e-36 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vium1580g00002 Homeodomain 4.1e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1580g00002 - - vum:124827065 650.973