Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1580g00001 ATGTCGGATTCTTATGCTAGTACCTTTCACTCTCCCACTCCAAACGTCACCCATGCAACCCCCAAAATCACCACATTGTGCTCAATAGCTCAACCTTATTGTATTTGCACTCACTGTAACCACATCCTCTCCTTCAACCACCGTGTTGGTAATGCAGCAGAGGAAGGGACAAATAACACAGGGTCCCATGTTCAGTCCCAGCAAAGCACAAGGTGGAGTCCAACACCAGTTCAGTTACTGGTCCTTGAGGAATTGTATAGGCAAGGCACTAAAACACCATCAGCTGAACAGATTCAGCAAATAGCTTCACAGTTGCGGCAGTTTGGGAAGATTGAAGGGAAGAACGTGTTCTACTGGTTCCAGAATCACAAGGCGAGAGAGAGACAGAAGAGGCGCCGCAGGGAGATGGAGGAAAATAATGCTGCTTCTTCTAGCGAAGGGTTGAAAGAGACAGGTTGTGGAGTTAAAGAGACAAAGAAGTGGGCATCCACTTCAAACTGCAGTCTACATGCAGAGGAATCTGCCGCACTGGATATAGCAGAAAAAGGCTCTAATGGGTGGACTCAGTTTGAGGAGAGAGGCATACAAGTTTTGAGGAGAAACATATCAGAAAGAAGGTAG 621 0.467 MSDSYASTFHSPTPNVTHATPKITTLCSIAQPYCICTHCNHILSFNHRVGNAAEEGTNNTGSHVQSQQSTRWSPTPVQLLVLEELYRQGTKTPSAEQIQQIASQLRQFGKIEGKNVFYWFQNHKARERQKRRRREMEENNAASSSEGLKETGCGVKETKKWASTSNCSLHAEESAALDIAEKGSNGWTQFEERGIQVLRRNISERR 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1580g00001 206 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 53 176 IPR044555 GO:0003700|GO:0099402
Vium1580g00001 206 FunFam WUSCHEL-related homeobox 4 69 136 - -
Vium1580g00001 206 SMART HOX_1 67 134 IPR001356 GO:0003677
Vium1580g00001 206 Pfam Homeodomain 69 129 IPR001356 GO:0003677
Vium1580g00001 206 ProSiteProfiles 'Homeobox' domain profile. 65 130 IPR001356 GO:0003677
Vium1580g00001 206 Gene3D - 61 135 - -
Vium1580g00001 206 Coils Coil 126 146 - -
Vium1580g00001 206 SUPERFAMILY Homeodomain-like 63 133 IPR009057 -
Vium1580g00001 206 MobiDBLite consensus disorder prediction 128 151 - -
Vium1580g00001 206 CDD homeodomain 70 125 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1580g00001 Vium-Chr1580 11580 13690 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1580g00001 58 175 Wox Gene Family AT3G18010 51.163 4.64e-35 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vium1580g00001 Homeodomain 1.8e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1580g00001 - - vum:124827066 402.134