Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1579g00004 ATGAATCATCCTTGTGCAAGCTCTAGAAACCTGTTGTCACAAATCCTGAATAGATATCTTCTAGTATGGATGATCTTAATGAAGGAATCAGCAATTGCTGCAACTCGTGCAGGAAATGAAACTGATTTGCAAGCTTTACTTGACTTCAAGAATAGGGTAGTAGCAGATCCATTCAACATTATGAGTTCTTGGAATGACTCCCTCCATCACTGCAATTGGATAGGAATCACATGCAACATCTCCAATGGAAGGGTCATGGACCTTAGTCTTGAGCAACTGAGACTAGGAGGCACTCTCACACCATTCATAGGAAACCTCACATTCCTCAACACACTCAACTTGTTAAACAATAGCTTTCATGGTGAAATTCCTCAAGAGGTGGGTCATTTACTCTATCTGGAACATCTAAACCTCAGCTTAAATAACTTTGGTGGGAGTATTCCAAGTAATCTAAGTCACTGCACAAAACTAGAAGTACTAGGTGTAGGAGGAAATAATCTTACAGGAGTAATCCCAACTTGGATTGGAAACCTTTCTTCTTTGTCTCGCATTAGCTTTGGATTAAACAACTTGATCGGAAGCATACCACAAGAGGTAGGCCTTTTATCAAGCTTGACATATCTTGTGCTATATGGGAATTACTTGTCTGGATCAGTTCCTTCTTCAATCTATAACAAATCTTCCTTATACTATTTCACTTTTACTCAAAACCAACTTCATGGGAACTTACCGGCCGATGTTGGGTTTACTCTTCCAAACATTCAAGTATTTGCTGGTGCGGTCAACCATCTTACAGGTTCTGTCCCTGCATCATTGTTGAATGCATCAAAACTAGAGATTCTTGACTTCTCCGTGAATGGTCTCACTGGAACACTGCCAAAGAACTTAGGGGTCTTGAACAGGTTAACTAGACTTAGCTTTGAACACAACAGACTGGGAACTGGGAAAACAGATGATCTTAGCTTTCTTGATTCTTTGGTCAACTGCACAGGTCTACAAGTTTTACGTCTAGGAGTAAATAATTTTGGTGGAGTATTGCCTAAATCAATTGCTAATTTCTCAAGCCAAATGCACACATTTGCCCTTGGAAATATACCTGGAATTGGCGACGGAATACATGGAAATATACCAGTTGGAATTGGCAATCTTGCTAACCTGGCCCTCATAAGTTTGGAAGGAAACCATCTAACTGGTAGTCTTCCTCATACATTGGGTAGGCTGAAAAATCTGAGAGAATTGTATCTGAATGTCAACAAATTTTCAGGTAGAATCCCATCCTCCTTGGGAAATTTGTCTGTATTAACGAAAATTTTTCTGGAGGAGAACAACTTCGAGGGAAGCATCCCTTCTAGTCTTGGAAACTGCCAAAATTTATTGGTACTCAGCCTTTATAGCAACAAGCTCAGTGGCACCATACCACCTGAAGTTATTGGCCTTTCTTCACTAGCAATTTATTTAGATGTATCTCATAATGCTTTGTCAGGGACTCTTCCATCTGAAGTGAGTAAGCTACAAAACCTTGGAGAGTTGGTGTTGTCTGAGAACAACTTTTCTGGAGTCATTCCATCTTCTCTTGGCAGATGCATTAGCTTGGAAAAGCTGCATTTGGAGGGAAATTCTTTTGATGGAAACATTCCTCAAACTTTAAAGAATTTGAGAGGTTTACTTGACATAGATCTTTCACGAAACAACTTGTCTGGCAAGATTCCCGAGTTTCTTGGGCAGTTCACTGAGCTCAAGCATTTAAATCTTTCATACAATAATTTTGAAGGTGAAATACCGAAGAATGGAATATTCAAAAATGCTACATCCCTTTCATTGTATGGCAACAGCAAGCTATGTGGGGGTATTCCAGAACTAAATTTCCCTCCATGCACTGTCAGGAAAGCTTCTTTGGCAAGAAGACTCCTTGCTCCTAAGGTGGTTATCCCTATAGCATGTGCACTTGTATTACTGCTAATTCTATCGTGTTTTCTTATATTGTTCCCCATAGTAAAAAGATCAAAGAAGAAAATTCCTACATCAACTACTGAAACGGGTTTGGAATTTGAAATTTCTTACTCAGAAATTAACAAGTGCACTGGTGGGTTCTCCCTGGATAACCTGATTGGTTCGGGAAGTTTTGGTTCTGTATATAAAGGAACTCTCTCAGGTGATAAATCAAGTGTCGCAGTTAAAGTATTAAACCTTCAACAGAAAGGAGCACCTGAGAGTTTCATTGATGAATGCCATGTTCTGAGAAGTGTAAGGCATCGTAACCTTCTCAAGATCATAACTGCGATCTCAGGAGTTGATCATCAAGGCAATGACTTCAAAGCTCTAGTGTTTGAGTACATGCCTAATGGAAGTCTAGAAGACTGGTTGCATCCTATAAGAAATTTGCAATTTCAGAAAAAGACATTGACATTCACTCAAAGACTGAACATAGCAATTGATGTTTCATGTGCACTGGAATACCTCCACCACTTCTGTGAAACTCCAATTGTTCATTGTGACATAAAGCCAAGTAACGTGCTTCTTGACAATGATATGGTTGCCCGTCTTGGTGACTTTGGATTAGCTACATTTCTGTATGAAGAATCAAACAAGTTATCCACACAACCAGTTATATCAGCTAACCTAAGGGGTTCTATTGGCTACATCCCTCCAGAGTATGGTATGGGTGGGAAGCCTTCCACACTTGGAGATATATACAGCTATGGGATACTGTTACTGGAAATTTTCACTGGAAAAAGGCCGACAGATGAAGCATTTGAAGGTGGCACGGGAATTCAGCAGTTTTAG 2784 0.398 MNHPCASSRNLLSQILNRYLLVWMILMKESAIAATRAGNETDLQALLDFKNRVVADPFNIMSSWNDSLHHCNWIGITCNISNGRVMDLSLEQLRLGGTLTPFIGNLTFLNTLNLLNNSFHGEIPQEVGHLLYLEHLNLSLNNFGGSIPSNLSHCTKLEVLGVGGNNLTGVIPTWIGNLSSLSRISFGLNNLIGSIPQEVGLLSSLTYLVLYGNYLSGSVPSSIYNKSSLYYFTFTQNQLHGNLPADVGFTLPNIQVFAGAVNHLTGSVPASLLNASKLEILDFSVNGLTGTLPKNLGVLNRLTRLSFEHNRLGTGKTDDLSFLDSLVNCTGLQVLRLGVNNFGGVLPKSIANFSSQMHTFALGNIPGIGDGIHGNIPVGIGNLANLALISLEGNHLTGSLPHTLGRLKNLRELYLNVNKFSGRIPSSLGNLSVLTKIFLEENNFEGSIPSSLGNCQNLLVLSLYSNKLSGTIPPEVIGLSSLAIYLDVSHNALSGTLPSEVSKLQNLGELVLSENNFSGVIPSSLGRCISLEKLHLEGNSFDGNIPQTLKNLRGLLDIDLSRNNLSGKIPEFLGQFTELKHLNLSYNNFEGEIPKNGIFKNATSLSLYGNSKLCGGIPELNFPPCTVRKASLARRLLAPKVVIPIACALVLLLILSCFLILFPIVKRSKKKIPTSTTETGLEFEISYSEINKCTGGFSLDNLIGSGSFGSVYKGTLSGDKSSVAVKVLNLQQKGAPESFIDECHVLRSVRHRNLLKIITAISGVDHQGNDFKALVFEYMPNGSLEDWLHPIRNLQFQKKTLTFTQRLNIAIDVSCALEYLHHFCETPIVHCDIKPSNVLLDNDMVARLGDFGLATFLYEESNKLSTQPVISANLRGSIGYIPPEYGMGGKPSTLGDIYSYGILLLEIFTGKRPTDEAFEGGTGIQQF 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1579g00004 927 ProSitePatterns Protein kinases ATP-binding region signature. 703 726 IPR017441 GO:0005524
Vium1579g00004 927 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 39 194 - -
Vium1579g00004 927 SMART LRR_typ_2 202 226 IPR003591 -
Vium1579g00004 927 SMART LRR_typ_2 407 431 IPR003591 -
Vium1579g00004 927 SMART LRR_typ_2 504 528 IPR003591 -
Vium1579g00004 927 SMART LRR_typ_2 576 601 IPR003591 -
Vium1579g00004 927 SMART LRR_typ_2 130 154 IPR003591 -
Vium1579g00004 927 SMART LRR_typ_2 383 406 IPR003591 -
Vium1579g00004 927 Gene3D Ribonuclease Inhibitor 153 254 IPR032675 -
Vium1579g00004 927 PANTHER OS04G0122200 PROTEIN 72 218 - -
Vium1579g00004 927 SMART serkin_6 697 927 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1579g00004 927 Pfam Protein kinase domain 699 915 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1579g00004 927 ProSitePatterns Serine/Threonine protein kinases active-site signature. 828 840 IPR008271 GO:0004672|GO:0006468
Vium1579g00004 927 FunFam LRR receptor-like serine/threonine-protein kinase EFR 668 778 - -
Vium1579g00004 927 SUPERFAMILY L domain-like 39 312 - -
Vium1579g00004 927 Gene3D Transferase(Phosphotransferase) domain 1 779 927 - -
Vium1579g00004 927 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 779 927 - -
Vium1579g00004 927 SUPERFAMILY Protein kinase-like (PK-like) 671 916 IPR011009 -
Vium1579g00004 927 Gene3D Phosphorylase Kinase; domain 1 679 778 - -
Vium1579g00004 927 Gene3D Ribonuclease Inhibitor 255 319 IPR032675 -
Vium1579g00004 927 Gene3D Ribonuclease Inhibitor 41 152 IPR032675 -
Vium1579g00004 927 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 198 292 - -
Vium1579g00004 927 Gene3D Ribonuclease Inhibitor 320 625 IPR032675 -
Vium1579g00004 927 Pfam Leucine rich repeat N-terminal domain 40 79 IPR013210 -
Vium1579g00004 927 SUPERFAMILY L domain-like 371 615 - -
Vium1579g00004 927 Pfam Leucine rich repeat 156 215 IPR001611 GO:0005515
Vium1579g00004 927 Pfam Leucine rich repeat 530 589 IPR001611 GO:0005515
Vium1579g00004 927 ProSiteProfiles Protein kinase domain profile. 697 927 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1579g00004 927 FunFam LRR receptor-like serine/threonine-protein kinase EFR 318 631 - -
Vium1579g00004 927 Pfam Leucine Rich Repeat 409 431 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1579g00004 Vium-Chr1579 48299 51434 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1579g00004 39 920 Receptor kinase-like Gene Family AT3G47570 46.827 0.0 768
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vium1579g00004 Pkinase 6.6e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1579g00004 - - vum:124827064 1806.19