Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1575g00035 ATGAGAGATATTTGTCGAAACTTCCAGCGAGGCAGCTGCCAATATGGAGAAAGGTGCAGATATTTACATGTCAACAACCAACAGAGAAAACCTAATGTTCAAGGGTTTGGAGGACAAAACGGTTCTCATCAACAGCAAAGTACAAATCCCTTTGGATTTGGGTCTGGTTCTGGCTCTGGCTCTGGCTTTGGGTCACAACAACAACAACAGAAGTCTAATCCTTTTGGTTTTGGCACGCAGAACAGTTCCCAGTTAAATGGGGGACCTCGTTCTGAGTATAAACCTAACCAATACAAGCCTTTTGAAAACAAATGGAATCGACAATCGTCCAAACCCCAGAATGGTGGGAAATCTGACAACAACCCCCAACCAGTAGATCATAAATGCACAGATCCTGAGAACTGCAAGCGCCAGATTGCAGAAGATTTCGAGAAAGAGAAACCAATTTGGATACTTACATGCTACAGTCATTGCAAAGGTGCTCCTTGTGACATTGTTGGTGATATTAGCTTTGAAGAATTGCGGGCATCAGCTTATGAGGATGCTAAGCGTGGGATGAGCTTGCAATCAATAGTTGAGAAAGAGAGAAGTATACTGAAATCCAAGATGCTCGAGTTTGAGAAACTACTTTCTGAACCTTACCAAAAACCAATAAATTCTTCTCTCGACAGTCAAAGACCCCAATCCATGGGAGCCAATGCAAATCTGTTTTCAGGAACATCTCCAAGTAATGGTCCTTTGTCAGTCTCAAGCTTTAGCCAACTGGGTACTTCAATGAACATGGGTTTTGGAAGGCCATCTGCACCACCAACAAACACTCTGGCACAGCCTAGTTTCTTTGGAGTTGGAGGAAACCTAAACAGCAGTGGCTCCTTCGGTGTTCAAAGCAACCCCCATTCTACACCAGCGGATTTGACAATATTTCCGGGTTCAACTCAGCAAACACCAGCCACATTCAATAACTCCGGTTTTCAAACAACATCAGATGTCCTGTTGTCAAATAAGTTACAACCAGAGAATGTGTCAGGAGATGTCAGTATTTGGTTAAAAGAGAAATGGAATCCAGGAGAGATTCCAGAAGAAGCTCCTCCTGATTCATTCGTACGTTAG 1110 0.4324 MRDICRNFQRGSCQYGERCRYLHVNNQQRKPNVQGFGGQNGSHQQQSTNPFGFGSGSGSGSGFGSQQQQQKSNPFGFGTQNSSQLNGGPRSEYKPNQYKPFENKWNRQSSKPQNGGKSDNNPQPVDHKCTDPENCKRQIAEDFEKEKPIWILTCYSHCKGAPCDIVGDISFEELRASAYEDAKRGMSLQSIVEKERSILKSKMLEFEKLLSEPYQKPINSSLDSQRPQSMGANANLFSGTSPSNGPLSVSSFSQLGTSMNMGFGRPSAPPTNTLAQPSFFGVGGNLNSSGSFGVQSNPHSTPADLTIFPGSTQQTPATFNNSGFQTTSDVLLSNKLQPENVSGDVSIWLKEKWNPGEIPEEAPPDSFVR 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1575g00035 369 PANTHER NUCLEOPORIN-LIKE PROTEIN 2 97 340 - -
Vium1575g00035 369 MobiDBLite consensus disorder prediction 30 91 - -
Vium1575g00035 369 MobiDBLite consensus disorder prediction 217 241 - -
Vium1575g00035 369 SMART c3hfinal6 1 25 IPR000571 GO:0046872
Vium1575g00035 369 MobiDBLite consensus disorder prediction 30 132 - -
Vium1575g00035 369 Pfam CCCH-type zinc finger 4 23 IPR041367 -
Vium1575g00035 369 SUPERFAMILY CCCH zinc finger 3 29 IPR036855 GO:0046872
Vium1575g00035 369 Gene3D - 1 52 - -
Vium1575g00035 369 ProSiteProfiles Zinc finger C3H1-type profile. 4 26 IPR000571 GO:0046872
Vium1575g00035 369 MobiDBLite consensus disorder prediction 101 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1575g00035 Vium-Chr1575 150661 155668 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vium1575g00035 zf-CCCH_4 1e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1575g00035 K14321 - gmx:100782777 555.058