Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1575g00027 ATGATGCTTATTGTTCTTGTCTTTGGTTTTGTTGGGGACCATTATGTTCATCACTATGTTGTCCTCACCAACTACAACACAATTGAAAAATGCTGCGTAGGAATCTTTAACCTTAATCGAAGACTCGCATTGAAATGGCATCCTGACAAGCACGGAGGTGACAGTGCTGTTACTACAAAATTTCAAGAGATAAATGAAGCTTACAATGTATTAAGTGATCCTGCCAAGCGTCTTGATTATGATTTAACGGGGATATGCGAAATTGAAAAATATAGTTTACAGGAATATCTTGCCAGATTTAAGGGCATGATTCTTACCTGCAATGGACTTGGTATCAGTCAAACAGACAGATGGTCACCACAATTGATTGAAAATTTTGAATCCCTTGATAAATAA 396 0.3687 MMLIVLVFGFVGDHYVHHYVVLTNYNTIEKCCVGIFNLNRRLALKWHPDKHGGDSAVTTKFQEINEAYNVLSDPAKRLDYDLTGICEIEKYSLQEYLARFKGMILTCNGLGISQTDRWSPQLIENFESLDK 131
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vium1575g00027 131 ProSiteProfiles dnaJ domain profile. 17 84 IPR001623 -
Vium1575g00027 131 ProSitePatterns Nt-dnaJ domain signature. 61 80 IPR018253 -
Vium1575g00027 131 CDD DnaJ 40 73 IPR001623 -
Vium1575g00027 131 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 40 115 - -
Vium1575g00027 131 Pfam DnaJ domain 40 81 IPR001623 -
Vium1575g00027 131 SMART dnaj_3 30 76 IPR001623 -
Vium1575g00027 131 Gene3D DnaJ domain 37 97 IPR036869 -
Vium1575g00027 131 SUPERFAMILY Chaperone J-domain 40 104 IPR036869 -
Vium1575g00027 131 PRINTS DnaJ domain signature 76 95 IPR001623 -
Vium1575g00027 131 PRINTS DnaJ domain signature 39 54 IPR001623 -
Vium1575g00027 131 PRINTS DnaJ domain signature 56 76 IPR001623 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vium1575g00027 Vium-Chr1575 115039 117985 Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1575g00027 40 81 C2H2 Transcription Factor Family AT1G74250 48.936 1.23e-06 44.3
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1575g00027 - - gmx:100527491 183.341