Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vium1575g00026 | ATGGCTGCTGCTGACGACACAAACCCTCCTAAGGATTATTACAAAGTGCTGGAGGTTGATTATGATGCAACTGATGAAAATATCAAATTAAATTACCGAAGACTCGCATTGAAATGGCATCCTGACAAGCACGGAGGTGACAGTGCTGTTACTACAAAATTTCAAGAGATAAATGAAGCTTACAATGTATTAAGTGATCCTGCCAAGCGTCTTGATTATGATTTAACGGGGATATGCGAAATTGAAAAATATAGTTTACAGGAATATCTTGCCAGATTTAAGGGCATGATTCTTACCTGCAATGGACTTGGTATCAGTCAAACAGACAGATGGTCACCACAATTGATTGAAAATTTTGAATCCCTTGATAAATAA | 375 | 0.3733 | MAAADDTNPPKDYYKVLEVDYDATDENIKLNYRRLALKWHPDKHGGDSAVTTKFQEINEAYNVLSDPAKRLDYDLTGICEIEKYSLQEYLARFKGMILTCNGLGISQTDRWSPQLIENFESLDK | 124 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vium1575g00026 | 124 | PRINTS | DnaJ domain signature | 14 | 32 | IPR001623 | - | |
Vium1575g00026 | 124 | PRINTS | DnaJ domain signature | 49 | 69 | IPR001623 | - | |
Vium1575g00026 | 124 | PRINTS | DnaJ domain signature | 69 | 88 | IPR001623 | - | |
Vium1575g00026 | 124 | PRINTS | DnaJ domain signature | 32 | 47 | IPR001623 | - | |
Vium1575g00026 | 124 | CDD | DnaJ | 12 | 66 | IPR001623 | - | |
Vium1575g00026 | 124 | Gene3D | DnaJ domain | 2 | 90 | IPR036869 | - | |
Vium1575g00026 | 124 | FunFam | Chaperone protein DNAj, putative | 4 | 91 | - | - | |
Vium1575g00026 | 124 | SUPERFAMILY | Chaperone J-domain | 10 | 97 | IPR036869 | - | |
Vium1575g00026 | 124 | ProSitePatterns | Nt-dnaJ domain signature. | 54 | 73 | IPR018253 | - | |
Vium1575g00026 | 124 | SMART | dnaj_3 | 11 | 69 | IPR001623 | - | |
Vium1575g00026 | 124 | ProSiteProfiles | dnaJ domain profile. | 12 | 77 | IPR001623 | - | |
Vium1575g00026 | 124 | PANTHER | CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN | 5 | 108 | - | - | |
Vium1575g00026 | 124 | Pfam | DnaJ domain | 12 | 74 | IPR001623 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vium1575g00026 | Vium-Chr1575 | 107864 | 111773 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vium1575g00026 | 13 | 74 | C2H2 Transcription Factor Family | AT1G74250 | 43.284 | 4.78e-10 | 53.9 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vium1575g00026 | - | - | gmx:100305987 | 236.884 |