Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1575g00026 ATGGCTGCTGCTGACGACACAAACCCTCCTAAGGATTATTACAAAGTGCTGGAGGTTGATTATGATGCAACTGATGAAAATATCAAATTAAATTACCGAAGACTCGCATTGAAATGGCATCCTGACAAGCACGGAGGTGACAGTGCTGTTACTACAAAATTTCAAGAGATAAATGAAGCTTACAATGTATTAAGTGATCCTGCCAAGCGTCTTGATTATGATTTAACGGGGATATGCGAAATTGAAAAATATAGTTTACAGGAATATCTTGCCAGATTTAAGGGCATGATTCTTACCTGCAATGGACTTGGTATCAGTCAAACAGACAGATGGTCACCACAATTGATTGAAAATTTTGAATCCCTTGATAAATAA 375 0.3733 MAAADDTNPPKDYYKVLEVDYDATDENIKLNYRRLALKWHPDKHGGDSAVTTKFQEINEAYNVLSDPAKRLDYDLTGICEIEKYSLQEYLARFKGMILTCNGLGISQTDRWSPQLIENFESLDK 124
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vium1575g00026 124 PRINTS DnaJ domain signature 14 32 IPR001623 -
Vium1575g00026 124 PRINTS DnaJ domain signature 49 69 IPR001623 -
Vium1575g00026 124 PRINTS DnaJ domain signature 69 88 IPR001623 -
Vium1575g00026 124 PRINTS DnaJ domain signature 32 47 IPR001623 -
Vium1575g00026 124 CDD DnaJ 12 66 IPR001623 -
Vium1575g00026 124 Gene3D DnaJ domain 2 90 IPR036869 -
Vium1575g00026 124 FunFam Chaperone protein DNAj, putative 4 91 - -
Vium1575g00026 124 SUPERFAMILY Chaperone J-domain 10 97 IPR036869 -
Vium1575g00026 124 ProSitePatterns Nt-dnaJ domain signature. 54 73 IPR018253 -
Vium1575g00026 124 SMART dnaj_3 11 69 IPR001623 -
Vium1575g00026 124 ProSiteProfiles dnaJ domain profile. 12 77 IPR001623 -
Vium1575g00026 124 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 5 108 - -
Vium1575g00026 124 Pfam DnaJ domain 12 74 IPR001623 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vium1575g00026 Vium-Chr1575 107864 111773 Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1575g00026 13 74 C2H2 Transcription Factor Family AT1G74250 43.284 4.78e-10 53.9
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1575g00026 - - gmx:100305987 236.884