Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1575g00024 ATGATTCTGAAAGCTGATATGAAACTCGAATCAGGGACTTGTAATGTTTGCTCAGCTCCTTGTTCATCTTGCATGCATCTTAACCGAGCTCTAATGGGGTCAAATGCCAAAGAATTCTCTGATGAAAACTCTCGCTTAGGGGAGGGTAAGTATTGTGAGGATGATGGGTCTTCTCCTGGTAGCAGAGCTTGCGAAAGATTGAAGCATGCTGGCGATGACACCAATCACAAGCCTAGTATTTCTTTAACTCATGATTCTCGGTCTGAAAATGCTGAGAATGGACAAGCCTTATCTGAGAAGAATCAGGATTCCAAGTGTTTTGAAAGTCTTGACGATATCACTTCTAGTATCAGTAGGACCAGTAATGCTAATTTAGCGAGTGATAGGCACCAAATAAATACAGACAGAGTAAATGTATCTAGTAGTTCGACTTTAGTCAGTCACTTAGAGGCAGAAGGATCTGGACACGGGCCATCTGTTGACATGTCTGGTTTGTCAGAATGCTTTATGGAAAATGTAGATTCGTCATTTACCAAAGGGAGAGTACCTATTATTGCTGCTGATGCAAAACCTGTGGCAGATAAGGAAAACCTAAATAATAGTACAGCCAAAGTTTCAGTGGAAATATGTCCGAAGTCAGAAGCAGATATGGGAAATAATGTTGATGTTGCTAAAGATGAAGATCGTAAATATTTAGCCCATGATGGACTGCATGAGAAGGTTGATGAGCTGATTAAATCATCTGGCAGGTCTGAACCTCAATCAGAAGATGAGGGTGATGAATCAGATGTTGTTGAGCATGATGTAAAAGTATGTGACATCTGTGGAGATGCTGGTCGTGAAGATCTACTTGCCATATGTTGTAGGTGTAGTGATGGTGCAGAGCACACCTACTGCATGAGGGAAATGCTTGTCAAGCTCCCGGAAGGTGATTGGTTGTGTGAAGAATGCAAGTGTGCAGAGGAGACAACAAATCGAAGGCTCGTTGTCAAAGAAAAGAAAAAGCTTCATAAAGTTATTTCAGCTTCACAAATTTCTGGCAAAAGACCTTCTCAAAGCATGGAAATAGCTACAGCAGCTAAAAGGCAAGCTCTTGAATCGAGCACAGGATCACCAAAGGCATCAAGCCCAAAGAGAATAGTCTCACTCTCACGAGAATCTTCTCTCAAGAGCATGGATAAAGGAAAAATGAAGTCTGGGCAACAGATCCCCATGCGTAACCACCTTGGTGGCAATGGTGGCAATAATGTAGACCTTGCTCGGTCTCTTTCGACTGGCCCTCGGAGTCAAAATCCAAGGAGTACATTGTTGAAGTCCAATTCATTCAACAACTTCAATTCCAAGCCTAGAATCAAACTTGTCAATGAAGTTGTTCCCCAAAAGCAGAAAGGGGGTGTCGAACATATTTCTAAGAATATTGAGACACCTGCGGGGATGATGAGCAAATCAGTGTCATTCAAATCCTCACACTTGGGGCGGTCAAATACTAATGATTCAAAAGTTAAATCAAGTTTTTCTAAACCTGGAATTGTTCAGGATTTGAAACCACTGAGACATACAAAAGAATCGGGTTCACTTGACATGAAATTTCAACCTAAGATTGATCGACCTGTCATTTGTTCAACTACGGTTAGTTCTGTTGTTTCCACATCAAAAGGTGATCATAAGCTTGCTCCTCATGGTGAAACTGCTAAACCTTATACAGTTAACAACAATCGAGAGTTTAAGGTCAACCAAGATGGAAAAGTACATTCATTATCGAAGTCTATGAATAATACAGGCAGTAGAAGCCCAGAACCTCAAGTTAGTTCAGATAGAACATCAACCAGTGTTGATGAAACTCAACAGGATAGGATGCCTCGACTACACGAGACTGTTTATCAGGTTGACAGAACCAAAGATAGTTCTAATGATCATGTGAGGTCAGGTGTTACTAATGCTTCAAAGAGTTCATTCTGTCGTAAATGTAAAGATTTTGGCCATGCTACAGAATGTTGCTCGAGTAGTTGTAAGCAGGAATTTGGTCCTGAAGCATCAGTCATTACAAGTAGTTCAAAAAAGGATATTCATAAGGGAAATAGATTGAAAGCTGCAATCCAGGCAGCTTTGCGTAGAAGGCCTGAAATACATAAGAAGAAAGAAGGTCCTGATGAAACTAACGAGTTTCCTATATCAAGCAATGGTTTCAAACCTGAAGTCAATTCTCAAAGCCAAGTGTTGGTTTCCAACACAATGAAGAATAGTATATCTTCTGAAGAAACCCATGTGAAGCAGGAAATTCTTGAGAGTTCTTCATTTGAAACCTCTAAATATCCATCTGCTAATGATCCGAAGCAACTTAAATTTTGCCAAACTGATCCTTGCTCTCAGCTGAGAAAGTCAGATTTTGCTGGTCTCACTTCTGGAAAGCCTGTAGTGAGAGACTTGCCCAATAATGGCATGGCTATTTCAAGTGTTCTTTCGAAGATGTCGGTGATTCCGGAATATGAGTACATCTGGCAGGGTGTCTTTGAAGTGCGTAGAAATGGAAAGCCTCCAGACTTGTATGCTGGAATTCAGGCACATTTATCCGCATGTGCTTCTCCCAAAGTTATTGAGACAGTAAAGAATTTTTTACCTGAAGTTTCCCTAAATGAAGTTTCTCGATTGAGCATATGGCCTTCACAATTTCATCAAAGTGGTGCTAAAGAAGATAATATTGCTCTTTACTTCTTTGCCAAAGACATTGAAAGTTACGAGAGACACTACAAGGGTCTATTGGATCACATGGTTAGAAATGATTTGGCACTTAGGGGGACGTTTGATGGTGTTGAACTTCTCATATTTGCATCCAATCAGCTTCCGGAAGATTCACAACGTTGGAATATGTTATTTTTTCTATGGGGTATATTTAGAGGGAGGAGGATCAATCATTCAGATTCCACAAAAAGTGCATGTATTCCCAGTTTGAATGTGATGCCAAATGAGAAGGATCCATCTGTCATCATGACTTTGTCTGAAACTTGGTGTTCACCAAAACGCATAGATGAAGAGTCCATTGATCAAGGTCACAATAAGCCATGTAGGAATTTTGATAGTAAGGGAACTGTGTTTGGCCAGACACATTTGGAATTGCAAGTAAAGTTAGAGAGACAAGATTCTAGAGTCAACACCAAATCTACATCAGGGATTCAGATCACCGGTACCCAATCATTTCAAGAAATGAATTCCTCTGGTTCGTCCCTGGGAGATAGTGCACCAGATCATAGACGGTACATACAGTCTAAACCTCCCGAAGCAATGGGAACTAGTGTAAGTAGAAGGATTGTGGAAACAAAAACTAATCCTGATATTTCTGGTAAGCAAGAGACCTCTTTGTCTTCGGAGATCCCTTCTGTCGTTTGCCAAATAGATACTGCAAGTAATATCATTAAGGATAAAACTTTAGAGAGAACAAAATATGATGAGAATCAGCAAAGGCCTAAAAGGAAACAGTTGGAGAATGATCTCAATATTAATGAGGAGGCAACGTTTCAGGGAGAGCTGGATTTGGAAGGGGCCAACTTTCAGGTACCTACTGATAAAAAAATTAAGAATATAGATCTTTCAGATACAGTTGTGGAAACTTCTACAGTTAGTTATCGGAAACGGCCTTTGAATGAGGTAAATGGCAAATTGGAAGACAGAGAAAGTAGCAAGAAGCTGCAAACAAGTTTGGGTGGAGCTTTTGGATGTAACGATTCTGCTGGAGCCAGGGTCTCTTTCAGTGGTAGTTTCCCATCACTTGTGAACAATCTTGGTTCCTGTTCTTTAGGGGGCAAAGAAGCTTGCGATGAGAAAATCATCCACGAGGACCTAGGAACGATGGAAAGAACCTTTTTTCCTGTGGATACTCGTAATAAACTTAACTTGGGGATGGTGAACAGAGAGTCACTGAATGGGCCTCGTGAGTACGTGGACCAATTTGAAGTTGGGATTCCAAATTTGGAGCTTGCTTTGGGAGGTGAAACGAAACCGTCACACAAGGGTATGATGCCTTTCTTTGTTGGTACAGGTGACAAGAAAATCAACCCAGAAAAGACTCCAGATATCGAGCGAGACGATGACAACGTTGCTGCATCTCTTTCCTTGTCACTATCATTTCCATCATCAAGCAAAGAACACATCAAACCAGTTGCAAGAGATGAGCCTTTGCCTGATGCTAAATCACCGTTTCTTCTTTTTGGTAGATTCACGGACAAATAA 4224 0.4079 MILKADMKLESGTCNVCSAPCSSCMHLNRALMGSNAKEFSDENSRLGEGKYCEDDGSSPGSRACERLKHAGDDTNHKPSISLTHDSRSENAENGQALSEKNQDSKCFESLDDITSSISRTSNANLASDRHQINTDRVNVSSSSTLVSHLEAEGSGHGPSVDMSGLSECFMENVDSSFTKGRVPIIAADAKPVADKENLNNSTAKVSVEICPKSEADMGNNVDVAKDEDRKYLAHDGLHEKVDELIKSSGRSEPQSEDEGDESDVVEHDVKVCDICGDAGREDLLAICCRCSDGAEHTYCMREMLVKLPEGDWLCEECKCAEETTNRRLVVKEKKKLHKVISASQISGKRPSQSMEIATAAKRQALESSTGSPKASSPKRIVSLSRESSLKSMDKGKMKSGQQIPMRNHLGGNGGNNVDLARSLSTGPRSQNPRSTLLKSNSFNNFNSKPRIKLVNEVVPQKQKGGVEHISKNIETPAGMMSKSVSFKSSHLGRSNTNDSKVKSSFSKPGIVQDLKPLRHTKESGSLDMKFQPKIDRPVICSTTVSSVVSTSKGDHKLAPHGETAKPYTVNNNREFKVNQDGKVHSLSKSMNNTGSRSPEPQVSSDRTSTSVDETQQDRMPRLHETVYQVDRTKDSSNDHVRSGVTNASKSSFCRKCKDFGHATECCSSSCKQEFGPEASVITSSSKKDIHKGNRLKAAIQAALRRRPEIHKKKEGPDETNEFPISSNGFKPEVNSQSQVLVSNTMKNSISSEETHVKQEILESSSFETSKYPSANDPKQLKFCQTDPCSQLRKSDFAGLTSGKPVVRDLPNNGMAISSVLSKMSVIPEYEYIWQGVFEVRRNGKPPDLYAGIQAHLSACASPKVIETVKNFLPEVSLNEVSRLSIWPSQFHQSGAKEDNIALYFFAKDIESYERHYKGLLDHMVRNDLALRGTFDGVELLIFASNQLPEDSQRWNMLFFLWGIFRGRRINHSDSTKSACIPSLNVMPNEKDPSVIMTLSETWCSPKRIDEESIDQGHNKPCRNFDSKGTVFGQTHLELQVKLERQDSRVNTKSTSGIQITGTQSFQEMNSSGSSLGDSAPDHRRYIQSKPPEAMGTSVSRRIVETKTNPDISGKQETSLSSEIPSVVCQIDTASNIIKDKTLERTKYDENQQRPKRKQLENDLNINEEATFQGELDLEGANFQVPTDKKIKNIDLSDTVVETSTVSYRKRPLNEVNGKLEDRESSKKLQTSLGGAFGCNDSAGARVSFSGSFPSLVNNLGSCSLGGKEACDEKIIHEDLGTMERTFFPVDTRNKLNLGMVNRESLNGPREYVDQFEVGIPNLELALGGETKPSHKGMMPFFVGTGDKKINPEKTPDIERDDDNVAASLSLSLSFPSSSKEHIKPVARDEPLPDAKSPFLLFGRFTDK 1407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1575g00024 1407 MobiDBLite consensus disorder prediction 344 388 - -
Vium1575g00024 1407 MobiDBLite consensus disorder prediction 64 104 - -
Vium1575g00024 1407 SUPERFAMILY FYVE/PHD zinc finger 259 323 IPR011011 -
Vium1575g00024 1407 MobiDBLite consensus disorder prediction 1066 1101 - -
Vium1575g00024 1407 MobiDBLite consensus disorder prediction 585 617 - -
Vium1575g00024 1407 MobiDBLite consensus disorder prediction 84 104 - -
Vium1575g00024 1407 MobiDBLite consensus disorder prediction 585 615 - -
Vium1575g00024 1407 MobiDBLite consensus disorder prediction 417 443 - -
Vium1575g00024 1407 MobiDBLite consensus disorder prediction 707 733 - -
Vium1575g00024 1407 MobiDBLite consensus disorder prediction 549 572 - -
Vium1575g00024 1407 MobiDBLite consensus disorder prediction 341 443 - -
Vium1575g00024 1407 MobiDBLite consensus disorder prediction 64 83 - -
Vium1575g00024 1407 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 198 332 IPR013083 -
Vium1575g00024 1407 PANTHER - 269 999 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1575g00024 Vium-Chr1575 92895 100831 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1575g00024 164 356 C2H2 Transcription Factor Family AT3G01460 24.352 3.09e-08 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1575g00024 - - vun:114169861 2479.13