Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1575g00020 ATGGTATCCCTCAAATCTGGAAACAAATTGGACAAATATTCTATGATTCTGAAAGCTGATATGAAACTCGAATCAGGGACTTGTAATGTTTGCTCAGCTCCTTGTTCATCTTGCATGCATCTTAACCGAGCTCTAATGGGGTCAAATGCCAAAGAATTCTCTGATGAAAACTCTCGCTTAGGGGAGGGTAAGTATTGTGAGGATGATGGGTCTTCTCCTGGTAGCAGAGCTTGCGAAAGATTGAAGCATGCTGGCGATGACACCAATCACAAGCCTAGTATTTCTTTAACTCATGATTCTCGGTCTGAAAATGCTGAGAATGGACAAGCCTTATCTGAGAAGAATCAGGATTCCAAGTGTTTTGAAAGTCTTGACGATATCACTTCTAGTATCAGTAGGACCAGTAATGCTAATTTAGCGAGTGATAGGCACCAAATAAATACAGACAGAGTAAATGTATCTAGTAGTTCGACTTTAGTCAGTCACTTAGAGGCAGAAGGATCTGGACACGGGCCATCTGTTGACATGTCTGGTTTGTCAGAATGCTTTATGGAAAATGTAGATTCGTCATTTACCAAAGGGAGAGTACCTATTATTGCTGCTGATGCAAAACCTGTGGCAGATAAGGAAAACCTAAATAATAGTACAGCCAAAGTTTCAGTGGAAATATGTCCGAAGTCAGAAGCAGATATGGGAAATAATGTTGATGTTGCTAAAGATGAAGATCGTAAATATTTAGCCCATGATGGACTGCATGAGAAGGTTGATGAGCTGATTAAATCATCTGGCAGGTCTGAACCTCAATCAGAAGATGAGGGTGATGAATCAGATGTTGTTGAGCATGATGTAAAAGTATGTGACATCTGTGGAGATGCTGGTCGTGAAGATCTACTTGCCATATGTTGTAGGTGTAGTGATGGTGCAGAGCACACCTACTGCATGAGGGAAATGCTTGTCAAGCTCCCGGAAGGTGATTGGTTGTGTGAAGAATGCAAGTGTGCAGAGGAGACAACAAATCGAAGGCTCGTTGTCAAAGAAAAGAAAAAGCTTCATAAAGTTATTTCAGCTTCACAAATTTCTGGCAAAAGACCTTCTCAAAGCATGGAAATAGCTACAGCAGCTAAAAGGCAAGCTCTTGAATCGAGCACAGGATCACCAAAGGCATCAAGCCCAAAGAGAATAGTCTCACTCTCACGAGAATCTTCTCTCAAGAGCATGGATAAAGGAAAAATGAAGTCTGGGCAACAGATCCCCATGCGTAACCACCTTGGTGGCAATGGTGGCAATAATGTAGACCTTGCTCGGTCTCTTTCGACTGGCCCTCGGAGTCAAAATCCAAGGAGTACATTGTTGAAGTCCAATTCATTCAACAACTTCAATTCCAAGCCTAGAATCAAACTTGTCAATGAAGTTGTTCCCCAAAAGCAGAAAGGGGGTGTCGAACATATTTCTAAGAATATTGAGACACCTGCGGGGATGATGAGCAAATCAGTGTCATTCAAATCCTCACACTTGGGGCGGTCAAATACTAATGATTCAAAAGTTAAATCAAGTTTTTCTAAACCTGGAATTGTTCAGGATTTGAAACCACTGAGACATACAAAAGAATCGGGTTCACTTGACATGAAATTTCAACCTAAGATTGATCGACCTGTCATTTGTTCAACTACGGTTAGTTCTGTTGTTTCCACATCAAAAGGTGATCATAAGCTTGCTCCTCATGGTGAAACTGCTAAACCTTATACAGTTAACAACAATCGAGAGTTTAAGGTCAACCAAGATGGAAAAGTACATTCATTATCGAAGTCTATGAATAATACAGGCAGTAGAAGCCCAGAACCTCAAGTTAGTTCAGATAGAACATCAACCAGTGTTGATGAAACTCAACAGGATAGGATGCCTCGACTACACGAGACTGTTTATCAGGTTGACAGAACCAAAGATAGTTCTAATGATCATGTGAGGTCAGGTGTTACTAATGCTTCAAAGAGTTCATTCTGTCGTAAATGTAAAGATTTTGGCCATGCTACAGAATGTTGCTCGAGTAGTTGTAAGCAGGAATTTGGTCCTGAAGCATCAGTCATTACAAGTAGTTCAAAAAAGGATATTCATAAGGGAAATAGATTGAAAGCTGCAATCCAGGCAGCTTTGCGTAGAAGGCCTGAAATACATAAGAAGAAAGAAGGTCCTGATGAAACTAACGAGTTTCCTATATCAAGCAATGGTTTCAAACCTGAAGTCAATTCTCAAAGCCAAGTGTTGGTTTCCAACACAATGAAGAATAGTATATCTTCTGAAGAAACCCATGTGAAGCAGGAAATTCTTGAGAGTTCTTCATTTGAAACCTCTAAATATCCATCTGCTAATGATCCGAAGCAACTTAAATTTTGCCAAACTGATCCTTGCTCTCAGCTGAGAAAGTCAGATTTTGCTGGTCTCACTTCTGGAAAGCCTGTAGTGAGAGACTTGCCCAATAATGGCATGGCTATTTCAAGTGTTCTTTCGAAGATGTCGGTGATTCCGGAATATGAGTACATCTGGCAGGGTGTCTTTGAAGTGCGTAGAAATGGAAAGCCTCCAGACTTGTATGCTGGAATTCAGGCACATTTATCCGCATGTGCTTCTCCCAAAGTTATTGAGACAGTAAAGAATTTTTTACCTGAAGTTTCCCTAAATGAAGTTTCTCGATTGAGCATATGGCCTTCACAATTTCATCAAAGTGGTGCTAAAGAAGATAATATTGCTCTTTACTTCTTTGCCAAAGACATTGAAAGTTACGAGAGACACTACAAGGGTCTATTGGATCACATGGTTAGAAATGATTTGGCACTTAGGGGGACGTTTGATGGTGTTGAACTTCTCATATTTGCATCCAATCAGCTTCCGGAAGATTCACAACGTTGGAATATGTTATTTTTTCTATGGGGTATATTTAGAGGGAGGAGGATCAATCATTCAGATTCCACAAAAAGTGCATGTATTCCCAGTTTGAATGTGATGCCAAATGAGAAGGATCCATCTGTCATCATGACTTTGTCTGAAACTTGGTGTTCACCAAAACGCATAGATGAAGAGTCCATTGATCAAGGTCACAATAAGCCATGTAGGAATTTTGATAGTAAGGGAACTGTGTTTGGCCAGACACATTTGGAATTGCAAGTAAAGTTAGAGAGACAAGATTCTAGAGTCAACACCAAATCTACATCAGGGATTCAGATCACCGGTACCCAATCATTTCAAGAAATGAATTCCTCTGGTTCGTCCCTGGGAGATAGTGCACCAGATCATAGACGGTACATACAGTCTAAACCTCCCGAAGCAATGGGAACTAGTGTAAGTAGAAGGATTGTGGAAACAAAAACTAATCCTGATATTTCTGGTAAGCAAGAGACCTCTTTGTCTTCGGAGATCCCTTCTGTCGTTTGCCAAATAGATACTGCAAGTAATATCATTAAGGATAAAACTTTAGAGAGAACAAAATATGATGAGAATCAGCAAAGGCCTAAAAGGAAACAGTTGGAGAATGATCTCAATATTAATGAGGAGGCAACGTTTCAGGGAGAGCTGGATTTGGAAGGGGCCAACTTTCAGGTACCTACTGATAAAAAAATTAAGAATATAGATCTTTCAGATACAGTTGTGGAAACTTCTACAGTTAGTTATCGGAAACGGCCTTTGAATGAGGTAAATGGCAAATTGGAAGACAGAGAAAGTAGCAAGAAGCTGCAAACAAGTTTGGGTGGAGCTTTTGGATGTAACGATTCTGCTGGAGCCAGGGTCTCTTTCAGTGGTAGTTTCCCATCACTTGTGAACAATCTTGGTTCCTGTTCTTTAGGGGGCAAAGAAGCTTGCGATGAGAAAATCATCCACGAGGACCTAGGAACGATGGAAAGAACCTTTTTTCCTGTGGATACTCGTAATAAACTTAACTTGGGGATGGTGAACAGAGAGTCACTGAATGGGCCTCGTGAGTACGTGGACCAATTTGAAGTTGGGATTCCAAATTTGGAGCTTGCTTTGGGAGGTGAAACGAAACCGTCACACAAGGGTATGATGCCTTTCTTTGTTGGTACAGGTGACAAGAAAATCAACCCAGAAAAGACTCCAGATATCGAGCGAGACGATGACAACGTTGCTGCATCTCTTTCCTTGTCACTATCATTTCCATCATCAAGCAAAGAACACATCAAACCAGTTGCAAGAGATGAGCCTTTGCCTGATGCTAAATCACCGTTTCTTCTTTTTGGTAGATTCACGGACAAATAA 4266 0.4072 MVSLKSGNKLDKYSMILKADMKLESGTCNVCSAPCSSCMHLNRALMGSNAKEFSDENSRLGEGKYCEDDGSSPGSRACERLKHAGDDTNHKPSISLTHDSRSENAENGQALSEKNQDSKCFESLDDITSSISRTSNANLASDRHQINTDRVNVSSSSTLVSHLEAEGSGHGPSVDMSGLSECFMENVDSSFTKGRVPIIAADAKPVADKENLNNSTAKVSVEICPKSEADMGNNVDVAKDEDRKYLAHDGLHEKVDELIKSSGRSEPQSEDEGDESDVVEHDVKVCDICGDAGREDLLAICCRCSDGAEHTYCMREMLVKLPEGDWLCEECKCAEETTNRRLVVKEKKKLHKVISASQISGKRPSQSMEIATAAKRQALESSTGSPKASSPKRIVSLSRESSLKSMDKGKMKSGQQIPMRNHLGGNGGNNVDLARSLSTGPRSQNPRSTLLKSNSFNNFNSKPRIKLVNEVVPQKQKGGVEHISKNIETPAGMMSKSVSFKSSHLGRSNTNDSKVKSSFSKPGIVQDLKPLRHTKESGSLDMKFQPKIDRPVICSTTVSSVVSTSKGDHKLAPHGETAKPYTVNNNREFKVNQDGKVHSLSKSMNNTGSRSPEPQVSSDRTSTSVDETQQDRMPRLHETVYQVDRTKDSSNDHVRSGVTNASKSSFCRKCKDFGHATECCSSSCKQEFGPEASVITSSSKKDIHKGNRLKAAIQAALRRRPEIHKKKEGPDETNEFPISSNGFKPEVNSQSQVLVSNTMKNSISSEETHVKQEILESSSFETSKYPSANDPKQLKFCQTDPCSQLRKSDFAGLTSGKPVVRDLPNNGMAISSVLSKMSVIPEYEYIWQGVFEVRRNGKPPDLYAGIQAHLSACASPKVIETVKNFLPEVSLNEVSRLSIWPSQFHQSGAKEDNIALYFFAKDIESYERHYKGLLDHMVRNDLALRGTFDGVELLIFASNQLPEDSQRWNMLFFLWGIFRGRRINHSDSTKSACIPSLNVMPNEKDPSVIMTLSETWCSPKRIDEESIDQGHNKPCRNFDSKGTVFGQTHLELQVKLERQDSRVNTKSTSGIQITGTQSFQEMNSSGSSLGDSAPDHRRYIQSKPPEAMGTSVSRRIVETKTNPDISGKQETSLSSEIPSVVCQIDTASNIIKDKTLERTKYDENQQRPKRKQLENDLNINEEATFQGELDLEGANFQVPTDKKIKNIDLSDTVVETSTVSYRKRPLNEVNGKLEDRESSKKLQTSLGGAFGCNDSAGARVSFSGSFPSLVNNLGSCSLGGKEACDEKIIHEDLGTMERTFFPVDTRNKLNLGMVNRESLNGPREYVDQFEVGIPNLELALGGETKPSHKGMMPFFVGTGDKKINPEKTPDIERDDDNVAASLSLSLSFPSSSKEHIKPVARDEPLPDAKSPFLLFGRFTDK 1421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1575g00020 1421 MobiDBLite consensus disorder prediction 431 457 - -
Vium1575g00020 1421 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 212 346 IPR013083 -
Vium1575g00020 1421 MobiDBLite consensus disorder prediction 65 118 - -
Vium1575g00020 1421 MobiDBLite consensus disorder prediction 721 747 - -
Vium1575g00020 1421 MobiDBLite consensus disorder prediction 563 586 - -
Vium1575g00020 1421 PANTHER - 283 1013 - -
Vium1575g00020 1421 MobiDBLite consensus disorder prediction 355 457 - -
Vium1575g00020 1421 MobiDBLite consensus disorder prediction 358 402 - -
Vium1575g00020 1421 SUPERFAMILY FYVE/PHD zinc finger 273 337 IPR011011 -
Vium1575g00020 1421 MobiDBLite consensus disorder prediction 73 97 - -
Vium1575g00020 1421 MobiDBLite consensus disorder prediction 599 631 - -
Vium1575g00020 1421 MobiDBLite consensus disorder prediction 1080 1115 - -
Vium1575g00020 1421 MobiDBLite consensus disorder prediction 599 629 - -
Vium1575g00020 1421 MobiDBLite consensus disorder prediction 98 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1575g00020 Vium-Chr1575 91302 100831 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1575g00020 178 370 C2H2 Transcription Factor Family AT3G01460 24.352 3.18e-08 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1575g00020 - - vun:114169861 2501.86