Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1575g00013 ATGAACAACAGTGGTGGAGGGACTTTGATGGGATTGAGCAATGGTTACTATGGGAGGTCGCCATTCACAGTGTCTCAGTGGGAGGAACTGGAGCACCAAGCTTTGATCTTCAAGTACATGCTTGCGGGTCTTCCTGTGCCTCAGAATCTGGTGCTCCCCATTCAGAAGAGCTTCAATTCTATACCACATGCCTTCTTTCACCATCCCACATTGAGTTACTGTTCCTTCTATGGGAAAAAGGTGGACCCAGAGCCAGGGAGATGTAGGAGGACTGATGGAAAAAAGTGGAGGTGCTCCAAGGAAGCATACCCAGACTCCAAGTACTGTGAGCGCCACATGCACCGTGGCCGCAACCGTTCAAGAAAGCCTGTGGAATCACAAACTATGACTCAATCCTCTTCGACTGTCACAACACTTGATGTCACTGGTGGCAGTGGCAGCAGTAGAACTGTAAACTTCCAAAATCTTCCTGCAAATGCTGTTGGTAATCTCCAGGGTACTGATTCTGGAACTGACCATACCAGTTATCATCTAGATTCCATTCCTTATGCCATCCCAAGTAAAGAATACAGGTATCTTCAAGGACTTAAATCTGAGGGTGGTGAACATATCTTCTTTTCTGAAGCTTCAGGAAGCAGCAAAGTTCTCCAAATGGAGTCACAACAGCTGGAAGACACATGGTCTTTGATGTCTAACAAAGTTGCCTCTTTTTCTACGTCAAAATCAAGTAATGATTCCCTGTTGCATAGTGATTATCCTCAAAACTCGTTTTTATCTGGTGAATATGCATCAGAAGAGCACCTGAAGGAGGAGGGTCAGTCTCTTCGACCCTTTTTCAATGAATGGCCAAAAGGCAGGGATTCATGGTCTGGTCTGGAAGATGAGAGATCTAACCAAGCAGCTTTCTCCACAACTCAACTTTCAATATCCATTCCCATGTCTTCTGATATCTCTGCAACGAGCTCTCAGTCCCCACACGGTGAGAATGAGATTCAATTTCGGTAA 1005 0.4547 MNNSGGGTLMGLSNGYYGRSPFTVSQWEELEHQALIFKYMLAGLPVPQNLVLPIQKSFNSIPHAFFHHPTLSYCSFYGKKVDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVESQTMTQSSSTVTTLDVTGGSGSSRTVNFQNLPANAVGNLQGTDSGTDHTSYHLDSIPYAIPSKEYRYLQGLKSEGGEHIFFSEASGSSKVLQMESQQLEDTWSLMSNKVASFSTSKSSNDSLLHSDYPQNSFLSGEYASEEHLKEEGQSLRPFFNEWPKGRDSWSGLEDERSNQAAFSTTQLSISIPMSSDISATSSQSPHGENEIQFR 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1575g00013 334 ProSiteProfiles QLQ domain profile. 21 56 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vium1575g00013 334 PANTHER GROWTH-REGULATING FACTOR 5 20 316 IPR031137 GO:0005634|GO:0006351|GO:0032502
Vium1575g00013 334 Pfam QLQ 21 55 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vium1575g00013 334 ProSiteProfiles WRC domain profile. 82 126 IPR014977 -
Vium1575g00013 334 Pfam WRC 83 125 IPR014977 -
Vium1575g00013 334 MobiDBLite consensus disorder prediction 313 334 - -
Vium1575g00013 334 MobiDBLite consensus disorder prediction 123 148 - -
Vium1575g00013 334 SMART QLQ_2 20 56 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vium1575g00013 334 MobiDBLite consensus disorder prediction 114 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1575g00013 Vium-Chr1575 75208 78942 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1575g00013 8 125 GRF Transcription Factor Family AT3G13960 59.016 9.44e-46 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Vium1575g00013 WRC 1.8e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1575g00013 - - gmx:100787567 583.178