Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1575g00011 ATGGCTCCTTCTGGCTGTGTTACCGATTCGATTCATCCGTCAACAGCGCCGGAAGTTGAAGAGAAGGATCTTCGGCCATTCTTTGTTCTTCATAAAGCTTCATCCCGGAAAAAAGATAGAACACCAACTGCACAGGCAAAGTTGTGCAAGACAAATGAATTATCTTCATCACCAGAGAGTGTAAAGAAGTTGGGAGGAAGTATGACGGGGGGATGTGATCTCCATTTGTTTCAGCAACTACAAATTGAAGCTTTTGACATTGTTTGGGAAAAGATCGAATCTACCATTAAGGGTGTTTTAAGAGATCTCAATGCCAATGTATTTAATAGTATACAACAATGGGTTCTGGAGTGCTTCAACACTACTAAGTTGCTTGGACAACATACCATTGCTGAAGCAACTCGGTCTTTTCCTGTTCTAAATAATACCACTCATGGGCAGCTGTTCACTGCTTTTATTGTCACCAGAAACATAGAGTTCGTTGATGATATGTTGACATTTGAAGAGCTTGGCCATTTCTTGAAATCCCATGGATGCCATGTGGCTAAGCTTTCATCCCTAGAGTTTTCATTGAAAAATGGGATTGCTGGTTGCTTGAAAGCTCTGTTGCGAGAGTTTGTTGGATGTGTTATTGATTCAGCTGATATATCAATCTTAGCATCATGGTATAGAGAACATGTAAACTACAATAAACCACTGGTGCTGATCATTAATGATTTGGGGAGATGTTCTGGATCAGTCTTAACTGATTTTATCTTGATGCTGAGTGAATGGATTGTCAAGGTGCCAATTATCTTCATATTTGGAGTTGCAACGATAGTGGATACCCCGAGAAACATTCTGCCATCACATGCTCTTGAGCGTTTGTGTCCCTCTAGTTTTATGCTTGGAACACCTGCCGAGAGAATGGATGCAGTTGTTGAGGCTGTTCTTGTGAAACATTGTACCATGTTTAGTATTGGTCATAAAGTGGCAGTCTTCCTGAGGAACTACTTCATCAACCAGGATGGGACAATAACATCCTTTATTAGAGCTTTGAAGGTAGCTTGCCTATTGCATTTCTCAATGGAACCTCTAAGTCTCATACATGGGCGAGCACTGGCTGAAGATCAGAAGGAGGGTAAATCTGCAGTATCACCTGAGACACTGCTGAAATACATAGATGAACTTCCATTGTATGCAAGGAATCAAATTGCTGATCATCACACCAAAAAGAGCACGGCTGAGGCTTTGTCAGAATTGGTGACAATGCAGAAACTATGGAGTACTGCAGTTCTGTGCCTATATGAAGCTGGAAAATATAGCAGAGTGCGACTATTGGATTTGTTTTGTGAAGCTCTAAGTCATGATAAGTACCTGTCAACGGGTCCTGATTGTCGTGTGGGAAATGAAAGAAATTGTGGTTTGTCTTCCACAAATGATTCCTGTCAACAATATTCCATCATGCAAAGCGGTGGTTATATTGGCCAGATAGTACGAAATGTGAGGGATCTCCCCGCAGGGATGCTATATCAGTTAATTGAGAATTGGGAAAAACTTACTGCAGATATTTCAGAGATTCACGAGAAACTGAAAGTGTTGCAATCTTCATTAAGATGTGAAGATGGAAAGAGTCCACGCAAGAGTTCCAAGGACAATCCCAAGAGATATGCGTCCAGGATTTCAGTAAACACTGATAAGGATGCGAGAATGCTAAATTCACAAGCTATTGCATTTTTAAACTGTTTAGTTGGGAATTTTTTGAAGCCCATTGAAGGCATGCCTTTCCACGAAATTTTATGTTTCAAGAATGTTGAGAAGCTTCAATTGGTTTTGATTGGAGATCCAAGAAGAAGAATTCAGGTTGATCTGTTGGAGTTCCATAAGATTTTAAGGTGTAGCTGCTGTAGCAAGAATGGCAATGCCCTATTGCCATCCAGGCATGATTCCTCAATTATGTATTCTCTGGCTCAAGAGCATGGAGATCTTATCAATCTCCATGACTGGTTTCAGTCTTTTAGATCAATTGTTCTTCAAAATAAAAATAAACGGAAGCAAAGTGCAAAGCAATCCCCACAACCAAAGAAGAGAAAAGCTATAAATGGATCTGCAGACCAAAACGAAGCGTCAATTCAAGCACGCTTTTGTAAGGCAGTTACAGAGCTGCAGATCACAGGACTGGTTAGAATGCCCAGCAAGAGACGCCCAAATTTTGCGCAAAGAATAGCATTTGGACTTTGA 2220 0.4072 MAPSGCVTDSIHPSTAPEVEEKDLRPFFVLHKASSRKKDRTPTAQAKLCKTNELSSSPESVKKLGGSMTGGCDLHLFQQLQIEAFDIVWEKIESTIKGVLRDLNANVFNSIQQWVLECFNTTKLLGQHTIAEATRSFPVLNNTTHGQLFTAFIVTRNIEFVDDMLTFEELGHFLKSHGCHVAKLSSLEFSLKNGIAGCLKALLREFVGCVIDSADISILASWYREHVNYNKPLVLIINDLGRCSGSVLTDFILMLSEWIVKVPIIFIFGVATIVDTPRNILPSHALERLCPSSFMLGTPAERMDAVVEAVLVKHCTMFSIGHKVAVFLRNYFINQDGTITSFIRALKVACLLHFSMEPLSLIHGRALAEDQKEGKSAVSPETLLKYIDELPLYARNQIADHHTKKSTAEALSELVTMQKLWSTAVLCLYEAGKYSRVRLLDLFCEALSHDKYLSTGPDCRVGNERNCGLSSTNDSCQQYSIMQSGGYIGQIVRNVRDLPAGMLYQLIENWEKLTADISEIHEKLKVLQSSLRCEDGKSPRKSSKDNPKRYASRISVNTDKDARMLNSQAIAFLNCLVGNFLKPIEGMPFHEILCFKNVEKLQLVLIGDPRRRIQVDLLEFHKILRCSCCSKNGNALLPSRHDSSIMYSLAQEHGDLINLHDWFQSFRSIVLQNKNKRKQSAKQSPQPKKRKAINGSADQNEASIQARFCKAVTELQITGLVRMPSKRRPNFAQRIAFGL 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1575g00011 739 Pfam Origin recognition complex winged helix C-terminal 610 737 IPR040855 -
Vium1575g00011 739 MobiDBLite consensus disorder prediction 674 699 - -
Vium1575g00011 739 CDD Orc3 83 362 - -
Vium1575g00011 739 CDD Orc3 588 737 - -
Vium1575g00011 739 Pfam Origin recognition complex (ORC) subunit 3 N-terminus 79 207 IPR045667 -
Vium1575g00011 739 Pfam Origin recognition complex (ORC) subunit 3 N-terminus 225 361 IPR045667 -
Vium1575g00011 739 PANTHER ORIGIN RECOGNITION COMPLEX SUBUNIT 3 21 738 IPR020795 GO:0003677|GO:0005664|GO:0006260
Vium1575g00011 739 MobiDBLite consensus disorder prediction 674 690 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1575g00011 1 671 Core DNA Replication Machinery Family AT5G16690 45.614 0.0 607
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1575g00011 K02605 - gmx:100780646 1218.37