Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1572g00006 ATGGGGTCGAAACCGTGGCTTTACCCTGCTTCCACCTATAGAAATTTGGAAACTTTCTGGGATACCGATGAGGACGCGCCTGGTCCTCGTTGTGGACACACCCTCACTGCAGTTGCTGCCACCAAGACACAGGGTCCTCGTTTGATCCTGTTCGGCGGCGCCACTGCCATTGAAGGAGGATCTTCCTCCGCTCCTGGCATTAGGTTAGCTGGAGTCACAAATACAGTTCATTCATATGACGTGCAAACTAGAAAATGGACTAGCCTTAAACCGGCCGGGGAGCCGCCTTCTCCTAGAGCTGCTCATGCAGCTGCTGCAGTTGGTACCATGGTTGTTTTTCAGGGTGGGATAGGACCAGCTGGGCATTCTACTGATGATCTTTATGTGCTTGACTTGACCAACGATAAATACAAATGGCACAGGGTTGTGGTACAAGGGCAAGGACCTGGACCTCGTTATGGCCATGTAATGGATTTGGTTGCTCAGAGATACCTAGTAACTGTCAGTGGAAATGATGGGAAAAGAGTTGTATCTGATGCTTGGGTTTTGGATACTGCTCAAAAACCTTATGTGTGGCAGAAGTTGAATCCAGAAGGTGACAGACCTTCTGCAAGAATGTATGCAACTGCTAGTGCCCGCTCAGATGGGATGTTTTTACTCTGTGGTGGAAGAGACTCTTCTGGAGCTCCACTAGCAGATGCCTATGGACTGCTCATGCATAGGAATGGCCAGTGGGAATGGACCCTTGCACCTGGAGTTTCCCCTTCACCAAGGTATCAACATGCTGCGGTTTTTGTTGGTGCACGATTACATGTTACGGGAGGTGTTCTTAGGGGTGGACGGTCCGTGGAAGGTGAAGCATCCATTGCAGTATTGGACACTGCTGCTGGGGTTTGGTTGGACAGAAATGGCATTGTATCCTCCTCACGCTCAAACAAAGGTCATGATTATGACCCTTCTTTGGAGCTTATGCGTCGTTGTCGCCATGCAGCAGCAGCTGTTAGTACTCATATATTTATCTATGGTGGGCTAAGAGGAGATATATTACTAGACGATTTCTTAGTAGCTGAAAATTCACCATTGCAGTCTGACATTAATTCTCCTGATAGAGCTTCATCTGTTACAAGCTCCAAACCAAGTCAATCTAACTTAAATTATAATGTAACAACGCCAAAGTTGGATGGTGGATCAGACATTCTTTCATCTAGTGGCTTTGGCATGGACAGAAATTCATTGGAGAAACTGAGGGAAGCATCAGCTGCTGAAGCCGAGGCAGCTACTGCTGTCTGGCAAGCTGTGCAGGCCATATCCAGTAGTCCTGCTGAAGAAACATCTGCATCAGATGACAACTCGCAAGCTCCTGAAACTGTTTCAGATGGAAGTGATACAGAGGGAGATGTTCGCCTTCATCCTAGAGCTGTTGTAGTTGCGAAAGAGGCTGTTGGTAACCTGGGTGGAATGGTGAGGCAATTATCACTAGATCAATTTGAAAATGAAAGTAGACGCATGATTCCCATAAATAATGATTTGCCATATTCTACAAAGAAGTTCACCAGGCAGAAATCTCCTCAGGGATTACATAAAAAGATAATTTCAACTTTGCTTAGGCCTCGCAACTGGAAAGCTCCTGCAAACAGGCGGTTCTTCTTGGATTCTTATGAAGTGGGTGAACTTTGCTATGCAGCCGAGCAAATATTTATGCATGAACCAACTGTTCTTCAGCTTAAAGCTCCTGTTAAAGTATTTGGTGATCTTCATGGTCAGTTTGGTGATTTGATGCGGCTATTTGATGAATATGGATTTCCTTCTACTGCAGGAGACATTACCTATATTGACTACCTGTTTTTGGGAGATTACGTTGATCGAGGACAGCACAGCTTGGAAACCATTACCTTACTACTTGCTCTTAAGATTGAATATCCTGATAATGTTCACTTGATACGAGGAAATCACGAAGCTGCTGACATAAATGCATTGTTTGGTTTTCGTATTGAGTGCATTGAAAGAATGGGTGAAAATGATGGTATATGGGCATGGACACGATTCAATCAACTTTTTAACTATCTTCCATTAGCTGCTCTTTTTGAAAAGAAAATTATCTGTATGCATGGTGGCATAGGAAGATCTATCAATTCAGTAGAACAAATAGAGAAGCTTGAAAGACCCATAACAATGGATGCAGGATCTATTATTTTAATGGACCTTCTATGGTCTGATCCCACAGAAAATGACAGTGTAGAGGGTTTGAGACCAAATGCTAGAGGCCCAGGGCTTGTCACTTTTGGTCCTGATCGCGTCACAGACTTCTGCAAGAAAAATAAATTACAGCTCATTATAAGGGCCCATGAGTGTGTCATGGATGGTTTTGAACGATTTGCCCAGGGACAACTAATCACCCTTTTTTCTGCTACTAACTATTGTGGAACTGCAAACAATGCGGGAGCTATACTGGTAGTTGGCAGGGGTTTGGTTGTGGTTCCAAAATTAATTCATCCTTTACCACCTCCCCTTCAGTCTCCTGAAACTTCTCCCGAACGTGGTATGGATGAGACATGGATGCAGGAGCTTAATATTCAGAGGCCACCAACTCCTACTCGGGGTAGACCTCAACCAGACCTTGACCGTGGTTCACTGGCATATATATGA 2646 0.4471 MGSKPWLYPASTYRNLETFWDTDEDAPGPRCGHTLTAVAATKTQGPRLILFGGATAIEGGSSSAPGIRLAGVTNTVHSYDVQTRKWTSLKPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKYKWHRVVVQGQGPGPRYGHVMDLVAQRYLVTVSGNDGKRVVSDAWVLDTAQKPYVWQKLNPEGDRPSARMYATASARSDGMFLLCGGRDSSGAPLADAYGLLMHRNGQWEWTLAPGVSPSPRYQHAAVFVGARLHVTGGVLRGGRSVEGEASIAVLDTAAGVWLDRNGIVSSSRSNKGHDYDPSLELMRRCRHAAAAVSTHIFIYGGLRGDILLDDFLVAENSPLQSDINSPDRASSVTSSKPSQSNLNYNVTTPKLDGGSDILSSSGFGMDRNSLEKLREASAAEAEAATAVWQAVQAISSSPAEETSASDDNSQAPETVSDGSDTEGDVRLHPRAVVVAKEAVGNLGGMVRQLSLDQFENESRRMIPINNDLPYSTKKFTRQKSPQGLHKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMHEPTVLQLKAPVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPDNVHLIRGNHEAADINALFGFRIECIERMGENDGIWAWTRFNQLFNYLPLAALFEKKIICMHGGIGRSINSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVTDFCKKNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHPLPPPLQSPETSPERGMDETWMQELNIQRPPTPTRGRPQPDLDRGSLAYI 881
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vium1572g00006 881 Pfam Galactose oxidase, central domain 115 155 - -
Vium1572g00006 881 SUPERFAMILY Kelch motif 70 357 IPR015915 GO:0005515
Vium1572g00006 881 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE BSL3 8 881 - -
Vium1572g00006 881 ProSitePatterns Serine/threonine specific protein phosphatases signature. 647 652 IPR006186 GO:0016787
Vium1572g00006 881 SMART pp2a_7 550 836 IPR006186 GO:0016787
Vium1572g00006 881 Pfam Calcineurin-like phosphoesterase 578 785 IPR004843 GO:0016787
Vium1572g00006 881 SUPERFAMILY Metallo-dependent phosphatases 531 842 IPR029052 -
Vium1572g00006 881 Gene3D - 195 366 IPR015915 GO:0005515
Vium1572g00006 881 FunFam Serine/threonine-protein phosphatase 515 854 - -
Vium1572g00006 881 PIRSF STPPP_BSU1 1 881 IPR012391 GO:0004721|GO:0009742
Vium1572g00006 881 FunFam Serine/threonine-protein phosphatase 9 192 - -
Vium1572g00006 881 Pfam Serine-threonine protein phosphatase N-terminal domain 529 576 IPR031675 -
Vium1572g00006 881 MobiDBLite consensus disorder prediction 436 459 - -
Vium1572g00006 881 Pfam Galactose oxidase, central domain 29 96 - -
Vium1572g00006 881 Gene3D - 513 842 IPR029052 -
Vium1572g00006 881 FunFam Serine/threonine-protein phosphatase 195 363 - -
Vium1572g00006 881 PRINTS Serine/threonine phosphatase family signature 714 741 IPR006186 GO:0016787
Vium1572g00006 881 PRINTS Serine/threonine phosphatase family signature 774 794 IPR006186 GO:0016787
Vium1572g00006 881 PRINTS Serine/threonine phosphatase family signature 796 812 IPR006186 GO:0016787
Vium1572g00006 881 PRINTS Serine/threonine phosphatase family signature 578 605 IPR006186 GO:0016787
Vium1572g00006 881 PRINTS Serine/threonine phosphatase family signature 613 640 IPR006186 GO:0016787
Vium1572g00006 881 PRINTS Serine/threonine phosphatase family signature 684 710 IPR006186 GO:0016787
Vium1572g00006 881 PRINTS Serine/threonine phosphatase family signature 646 670 IPR006186 GO:0016787
Vium1572g00006 881 MobiDBLite consensus disorder prediction 436 468 - -
Vium1572g00006 881 MobiDBLite consensus disorder prediction 834 881 - -
Vium1572g00006 881 MobiDBLite consensus disorder prediction 361 401 - -
Vium1572g00006 881 Gene3D - 8 194 IPR015915 GO:0005515
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vium1572g00006 Vium-Chr1572 64056 75758 Dispersed/Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1572g00006 579 777 Calmodulin-binding Proteins AT5G63870 33.043 3.87e-28 114
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1572g00006 K01090 - gmx:100805538 1676.76