Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1572g00005 ATGGGGTCGAAACCGTGGCTTTACCCTGCTTCCACCTATAGAAATTTGGAAACTTTCTGGGATACCGATGAGGACGCGCCTGGTCCTCGTTGTGGACACACCCTCACTGCAGTTGCTGCCACCAAGACACAGGGTCCTCGTTTGATCCTGTTCGGCGGCGCCACTGCCATTGAAGGAGGATCTTCCTCCGCTCCTGGCATTAGGTTAGCTGGAGTCACAAATACAGTTCATTCATATGACGTGCAAACTAGAAAATGGACTAGCCTTAAACCGGCCGGGGAGCCGCCTTCTCCTAGAGCTGCTCATGCAGCTGCTGCAGTTGGTACCATGGTTGTTTTTCAGGGTGGGATAGGACCAGCTGGGCATTCTACTGATGATCTTTATGTGCTTGACTTGACCAACGATAAATACAAATGGCACAGGGTTGTGGTACAAGGGCAAGGACCTGGACCTCGTTATGGCCATGTAATGGATTTGGTTGCTCAGAGATACCTAGTAACTGTCAGTGGAAATGATGGGAAAAGAGTTGTATCTGATGCTTGGGTTTTGGATACTGCTCAAAAACCTTATGTGTGGCAGAAGTTGAATCCAGAAGGTGACAGACCTTCTGCAAGAATGTATGCAACTGCTAGTGCCCGCTCAGATGGGATGTTTTTACTCTGTGGTGGAAGAGACTCTTCTGGAGCTCCACTAGCAGATGCCTATGGACTGCTCATGCATAGGAATGGCCAGTGGGAATGGACCCTTGCACCTGGAGTTTCCCCTTCACCAAGGTATCAACATGCTGCGGTTTTTGTTGGTGCACGATTACATGTTACGGGAGGTGTTCTTAGGGGTGGACGGTCCGTGGAAGGTGAAGCATCCATTGCAGTATTGGACACTGCTGCTGGGGTTTGGTTGGACAGAAATGGCATTGTATCCTCCTCACGCTCAAACAAAGGTCATGATTATGACCCTTCTTTGGAGCTTATGCGTCGTTGTCGCCATGCAGCAGCAGCTGTTAGTACTCATATATTTATCTATGGTGGGCTAAGAGGAGATATATTACTAGACGATTTCTTAGTAGCTGAAAATTCACCATTGCAGTCTGACATTAATTCTCCTGATAGAGCTTCATCTGTTACAAGCTCCAAACCAAGTCAATCTAACTTAAATTATAATGTAACAACGCCAAAGTTGGATGGTGGATCAGACATTCTTTCATCTAGTGGCTTTGGAAATTCATTGGAGAAACTGAGGGAAGCATCAGCTGCTGAAGCCGAGGCAGCTACTGCTGTCTGGCAAGCTGTGCAGGCCATATCCAGTAGTCCTGCTGAAGAAACATCTGCATCAGATGACAACTCGCAAGCTCCTGAAACTGTTTCAGATGGAAGTGATACAGAGGGAGATGTTCGCCTTCATCCTAGAGCTGTTGTAGTTGCGAAAGAGGCTGTTGGTAACCTGGGTGGAATGGTGAGGCAATTATCACTAGATCAATTTGAAAATGAAAGTAGACGCATGATTCCCATAAATAATGATTTGCCATATTCTACAAAGAAGTTCACCAGGCAGAAATCTCCTCAGGGATTACATAAAAAGATAATTTCAACTTTGCTTAGGCCTCGCAACTGGAAAGCTCCTGCAAACAGGCGGTTCTTCTTGGATTCTTATGAAGTGGGTGAACTTTGCTATGCAGCCGAGCAAATATTTATGCATGAACCAACTGTTCTTCAGCTTAAAGCTCCTGTTAAAGTATTTGGTGATCTTCATGGTCAGTTTGGTGATTTGATGCGGCTATTTGATGAATATGGATTTCCTTCTACTGCAGGAGACATTACCTATATTGACTACCTGTTTTTGGGAGATTACGTTGATCGAGGACAGCACAGCTTGGAAACCATTACCTTACTACTTGCTCTTAAGATTGAATATCCTGATAATGTTCACTTGATACGAGGAAATCACGAAGCTGCTGACATAAATGCATTGTTTGGTTTTCGTATTGAGTGCATTGAAAGAATGGGTGAAAATGATGGTATATGGGCATGGACACGATTCAATCAACTTTTTAACTATCTTCCATTAGCTGCTCTTTTTGAAAAGAAAATTATCTGTATGCATGGTGGCATAGGAAGATCTATCAATTCAGTAGAACAAATAGAGAAGCTTGAAAGACCCATAACAATGGATGCAGGATCTATTATTTTAATGGACCTTCTATGGTCTGATCCCACAGAAAATGACAGTGTAGAGGGTTTGAGACCAAATGCTAGAGGCCCAGGGCTTGTCACTTTTGGTCCTGATCGCGTCACAGACTTCTGCAAGAAAAATAAATTACAGCTCATTATAAGGGCCCATGAGTGTGTCATGGATGGTTTTGAACGATTTGCCCAGGGACAACTAATCACCCTTTTTTCTGCTACTAACTATTGTGGAACTGCAAACAATGCGGGAGCTATACTGGTAGTTGGCAGGGGTTTGGTTGTGGTTCCAAAATTAATTCATCCTTTACCACCTCCCCTTCAGTCTCCTGAAACTTCTCCCGAACGTGGTATGGATGAGACATGGATGCAGGAGCTTAATATTCAGAGGCCACCAACTCCTACTCGGGGTAGACCTCAACCAGACCTTGACCGTGGTTCACTGGCATATATATGA 2637 0.4467 MGSKPWLYPASTYRNLETFWDTDEDAPGPRCGHTLTAVAATKTQGPRLILFGGATAIEGGSSSAPGIRLAGVTNTVHSYDVQTRKWTSLKPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKYKWHRVVVQGQGPGPRYGHVMDLVAQRYLVTVSGNDGKRVVSDAWVLDTAQKPYVWQKLNPEGDRPSARMYATASARSDGMFLLCGGRDSSGAPLADAYGLLMHRNGQWEWTLAPGVSPSPRYQHAAVFVGARLHVTGGVLRGGRSVEGEASIAVLDTAAGVWLDRNGIVSSSRSNKGHDYDPSLELMRRCRHAAAAVSTHIFIYGGLRGDILLDDFLVAENSPLQSDINSPDRASSVTSSKPSQSNLNYNVTTPKLDGGSDILSSSGFGNSLEKLREASAAEAEAATAVWQAVQAISSSPAEETSASDDNSQAPETVSDGSDTEGDVRLHPRAVVVAKEAVGNLGGMVRQLSLDQFENESRRMIPINNDLPYSTKKFTRQKSPQGLHKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMHEPTVLQLKAPVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPDNVHLIRGNHEAADINALFGFRIECIERMGENDGIWAWTRFNQLFNYLPLAALFEKKIICMHGGIGRSINSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVTDFCKKNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHPLPPPLQSPETSPERGMDETWMQELNIQRPPTPTRGRPQPDLDRGSLAYI 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1572g00005 878 Gene3D - 195 364 IPR015915 GO:0005515
Vium1572g00005 878 MobiDBLite consensus disorder prediction 361 391 - -
Vium1572g00005 878 MobiDBLite consensus disorder prediction 831 878 - -
Vium1572g00005 878 Pfam Galactose oxidase, central domain 115 155 - -
Vium1572g00005 878 Pfam Serine-threonine protein phosphatase N-terminal domain 526 573 IPR031675 -
Vium1572g00005 878 Gene3D - 510 839 IPR029052 -
Vium1572g00005 878 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE BSL3 8 878 - -
Vium1572g00005 878 SUPERFAMILY Kelch motif 70 357 IPR015915 GO:0005515
Vium1572g00005 878 Pfam Calcineurin-like phosphoesterase 575 782 IPR004843 GO:0016787
Vium1572g00005 878 SUPERFAMILY Metallo-dependent phosphatases 528 839 IPR029052 -
Vium1572g00005 878 ProSitePatterns Serine/threonine specific protein phosphatases signature. 644 649 IPR006186 GO:0016787
Vium1572g00005 878 SMART pp2a_7 547 833 IPR006186 GO:0016787
Vium1572g00005 878 FunFam Serine/threonine-protein phosphatase 9 192 - -
Vium1572g00005 878 PIRSF STPPP_BSU1 1 878 IPR012391 GO:0004721|GO:0009742
Vium1572g00005 878 Pfam Galactose oxidase, central domain 29 96 - -
Vium1572g00005 878 FunFam Serine/threonine-protein phosphatase 512 851 - -
Vium1572g00005 878 FunFam Serine/threonine-protein phosphatase 195 363 - -
Vium1572g00005 878 PRINTS Serine/threonine phosphatase family signature 643 667 IPR006186 GO:0016787
Vium1572g00005 878 PRINTS Serine/threonine phosphatase family signature 610 637 IPR006186 GO:0016787
Vium1572g00005 878 PRINTS Serine/threonine phosphatase family signature 575 602 IPR006186 GO:0016787
Vium1572g00005 878 PRINTS Serine/threonine phosphatase family signature 771 791 IPR006186 GO:0016787
Vium1572g00005 878 PRINTS Serine/threonine phosphatase family signature 793 809 IPR006186 GO:0016787
Vium1572g00005 878 PRINTS Serine/threonine phosphatase family signature 681 707 IPR006186 GO:0016787
Vium1572g00005 878 PRINTS Serine/threonine phosphatase family signature 711 738 IPR006186 GO:0016787
Vium1572g00005 878 MobiDBLite consensus disorder prediction 434 456 - -
Vium1572g00005 878 MobiDBLite consensus disorder prediction 434 465 - -
Vium1572g00005 878 Gene3D - 7 194 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1572g00005 Vium-Chr1572 64056 75760 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1572g00005 576 774 Calmodulin-binding Proteins AT5G63870 33.043 3.85e-28 114