Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1572g00002 ATGAAGATCGGAATTTTGCTATGTGTTGCACTTTTTCTTAGGGTTTGTCAAGGAGGTAGCCTGAGGAAAAATTTCTACCGCGATTCCTGCCCTCAAGCCGAGGACATCATCAAGAGCCAAACACAACAGCATGTGTCAGCTAATCCCAATTTGCCAGCCAAGTTGATTAGATTGCATTTTCATGATTGTTTTGTCAGGGGCTGTGATGCGTCGGTTTTGTTGAACTCTACTGCGAATAACACGGCAGAGAGGGACGCTATTCCAAATCTTTCTTTGGCTGGCTTTGATGTCATAGATGCCATAAAAAGTGCAGTGGAAGCAAAATGTCCCAAAACTGTATCTTGTGCTGACATACTGGCATTGGCAGCAAGAGACGCTGTTTCTGTCCAATTTAATAAACCTATGTGGGAAGTTCTCACTGGTAGAAGAGATGGCACGGTATCGACAAGTAACGAAGCCTTGGCAAATATCCCAGCACCTTTCTTCAACCTCACCCAACTCAGACAGAGTTTTGCTAGCAAAGGTCTCACTTTGCACGATCTGGTTGTATTATCAGGGGCACACACAATTGGAGTTGGGCATTGCAACTTGTTCAGTAACAGGCTTTATAATTTCACCGGGAAAGGTGATCAAGACCCTTCTTTGAATGCCACCTATGCTGCGTTCTTGAAGACCAAATGCCAGAGTCTTAGTGACAGCACCACAACGGTGGAAATGGACCCTGGAAGCTCGACCAATTTCGATAGTGACTATTATCCTAACCTTCTCCAGAAGAAGGGTCTGTTCCAGTCAGACGCTGCCCTTCTAACACTGGATCAATCAGCAGATATAGCTGGAGAGTTGGTGAATGAAGCCAAGTTCTTCACAGAGTTCGCACAATCAATGAAGAGAATGGGAAACATTGAGGTCCTCACTGACTCTGCTGGACAAATACGGAACAACTGTTCTGTTGTCAACTCATAA 963 0.4486 MKIGILLCVALFLRVCQGGSLRKNFYRDSCPQAEDIIKSQTQQHVSANPNLPAKLIRLHFHDCFVRGCDASVLLNSTANNTAERDAIPNLSLAGFDVIDAIKSAVEAKCPKTVSCADILALAARDAVSVQFNKPMWEVLTGRRDGTVSTSNEALANIPAPFFNLTQLRQSFASKGLTLHDLVVLSGAHTIGVGHCNLFSNRLYNFTGKGDQDPSLNATYAAFLKTKCQSLSDSTTTVEMDPGSSTNFDSDYYPNLLQKKGLFQSDAALLTLDQSADIAGELVNEAKFFTEFAQSMKRMGNIEVLTDSAGQIRNNCSVVNS 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1572g00002 320 CDD secretory_peroxidase 21 318 IPR033905 GO:0004601|GO:0042744
Vium1572g00002 320 ProSitePatterns Peroxidases proximal heme-ligand signature. 180 190 IPR019793 -
Vium1572g00002 320 Pfam Peroxidase 38 278 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium1572g00002 320 PANTHER PEROXIDASE 25-RELATED 9 307 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium1572g00002 320 ProSiteProfiles Plant heme peroxidase family profile. 20 319 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium1572g00002 320 FunFam Peroxidase 158 298 - -
Vium1572g00002 320 SUPERFAMILY Heme-dependent peroxidases 21 319 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vium1572g00002 320 PRINTS Plant peroxidase signature 93 106 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium1572g00002 320 PRINTS Plant peroxidase signature 238 253 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium1572g00002 320 PRINTS Plant peroxidase signature 112 122 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium1572g00002 320 PRINTS Plant peroxidase signature 30 49 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium1572g00002 320 PRINTS Plant peroxidase signature 54 74 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium1572g00002 320 PRINTS Plant peroxidase signature 179 191 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium1572g00002 320 PRINTS Plant peroxidase signature 132 147 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium1572g00002 320 PRINTS Plant peroxidase signature 293 306 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium1572g00002 320 PRINTS Plant peroxidase signature 254 271 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium1572g00002 320 PRINTS Haem peroxidase superfamily signature 180 195 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium1572g00002 320 PRINTS Haem peroxidase superfamily signature 113 130 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium1572g00002 320 PRINTS Haem peroxidase superfamily signature 52 66 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium1572g00002 320 PRINTS Haem peroxidase superfamily signature 132 144 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium1572g00002 320 PRINTS Haem peroxidase superfamily signature 240 255 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium1572g00002 320 FunFam Peroxidase 24 167 - -
Vium1572g00002 320 Gene3D Peroxidase, domain 2 158 298 - -
Vium1572g00002 320 Gene3D - 24 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1572g00002 Vium-Chr1572 52177 53742 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1572g00002 3 320 Peroxidase AT1G05260 57.099 6.28e-123 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1572g00002 K00430 - gmx:100806595 571.622