Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1568g00007 ATGTGCGGTGGTTCTATCATCTCTGATTTCATAGAAGTCGATATCAAGAATGTTCCAGAATCCACCACCCGTCGCCTCTTCTCTCAGCTCCACACTTTCAACGCCACCTCTTCTTCCACACTCAACAAAGTGGAGGAGCCATGTCAGAAGCTCAAGAACAGCAGAGTAGTTGCTGAGAAGGCTGGTGCGCGAGTACGGAAGAATGCCTACAGAGGAATCAGGCGAAGGCCGTGGGGCAAGTGGGCTGCCGAAATAAGGGACCCACGCAAGGGCGTTCGCGTGTGGCTCGGCACCTTCGCCACCGCGGAAGAAGCCGCACGCGCCTACGACGCCGCCGCCGTACGCATCCGCGGAGACAAGGCCAAGCTCAACTTCCCCGACCATCACCGCCACCCATCCAACATCAACAACAACCCATGCCTCAGCCCCGAGTTGACTCAGTCGTGTTATCAACCTAGTCTTAATAACCTCGACCACGACCCTCAACTCGCGCAACAGATTTCCAACCTGGAATCGTTTCTTGGTTTGGAGCACGAACAGCTTCCGATGCAGCCGCTGCCACTTCCTGAGTGGGACCCGCTCCACGACGTCGTTTTGTCCAACCACCACCTCTTCTGTAAAATTTAA 627 0.5534 MCGGSIISDFIEVDIKNVPESTTRRLFSQLHTFNATSSSTLNKVEEPCQKLKNSRVVAEKAGARVRKNAYRGIRRRPWGKWAAEIRDPRKGVRVWLGTFATAEEAARAYDAAAVRIRGDKAKLNFPDHHRHPSNINNNPCLSPELTQSCYQPSLNNLDHDPQLAQQISNLESFLGLEHEQLPMQPLPLPEWDPLHDVVLSNHHLFCKI 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1568g00007 208 SUPERFAMILY DNA-binding domain 69 127 IPR016177 GO:0003677
Vium1568g00007 208 PANTHER DNA-BINDING DOMAIN 49 147 IPR044808 GO:0003700|GO:0009873
Vium1568g00007 208 Gene3D AP2/ERF domain 69 127 IPR036955 GO:0003700|GO:0006355
Vium1568g00007 208 CDD AP2 70 128 IPR001471 GO:0003700|GO:0006355
Vium1568g00007 208 FunFam Ethylene-responsive transcription factor 2 68 127 - -
Vium1568g00007 208 Pfam AP2 domain 70 118 IPR001471 GO:0003700|GO:0006355
Vium1568g00007 208 ProSiteProfiles AP2/ERF domain profile. 69 126 IPR001471 GO:0003700|GO:0006355
Vium1568g00007 208 PRINTS Ethylene responsive element binding protein signature 92 108 IPR001471 GO:0003700|GO:0006355
Vium1568g00007 208 PRINTS Ethylene responsive element binding protein signature 70 81 IPR001471 GO:0003700|GO:0006355
Vium1568g00007 208 SMART rav1_2 69 132 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1568g00007 Vium-Chr1568 31831 32717 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1568g00007 1 177 AP2-EREBP Transcription Factor Family AT3G16770 44.144 4.25e-43 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium1568g00007 AP2 1.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1568g00007 K09286 - vra:106752604 160.614