Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1568g00005 ATGAATTCCAACTACGGCCAATCCAACACGAACAAATCGCCTTCCGTTTCCCTCAACAATTTCAATTTCGATTTCGATCTTGGCATCGGATCCAACCGTCCCAGGTCCCTCAACGACCAGAAAAACCCCAAAGCTTCCTATTCCACCACCAGTACCACCACCTCTTCCTATTCCTATCCATATTCCTCCACCCAACCCAACAAGCAACCCTCATGGACACACCAACCCGCTCCCACTCAGACCACCGCCCTGCCCGGTGGCCCCCCCTCCATGGTCGGAGACATCTTCGGTAAAAGCTGGGGCACCACTCAACCTTCTGCCGCTTCCAAAAACATTGGGGTCGTTGATAAGAACCCTAATCTCTTCGGAGATTTGGTTAGTTCTGCTTTGGGTTCCAAGTCTACTGCTACCAATGTTCCTCTCAAAAACGCTGCCCCAACCCCCAATAAAACCTCCTTTTCCATGGGAAACATGGCCAATTCTTTGCCCAAAACTGGTACCACGCCACAGAACAGTGCTAGTTGGGCATCGTCTTCTGGGGGGTTTAGCGTGAATGCCAACAAAACCCCCAATCTTGGGGGTGCTTCAATGCGAAACATGAGTAGTGGAATTGGAACCAGTTCTAATAACAAGGATCCTTTTAGTTCTTTGTCTGGTTTTGGATCCAAGCAGTCTGCTACTCTGAATTCAGCTGCCAAAGGGCCGAAGGTTGCATCCGGGGATGATGGTTTTGGAGATTTCCAAAATGCTTCCAAATCTAGTTCGGATGGTTTTGGAGACTTTCAAAATGCTTCAAAACCAAGCTCACCCGCGTTTCCATCTGCTGCTTCTCCTGGGATTGATTTCAATTTTGCTGGATCTGCCGCTTCCACTCAGAGTCCTGTTCAGGGATCAGGTGGTAGTGCAATGGACATGTTTTTCACGGCGGCTTCCTCGCCCGCGGTTGGAGGTGCTGCTTCGGCCTCTGATGGATTTGGTGGACAGGACGATTGGGGTTTGGATTCGGAGTTTGGTGGGGGAGGCCATGATGTGGGTGGCACCACTACTGAGCTTGAGGGGCTGCCTCCTCCTCCTGCTGGGGTCTCTGGTTCCACTGCAAAAGGCAAGGGGATGGACAACTACAAGCAGGGACAATTTGCTGATGCTATTAAGTGGTTTTCGTGGGCCATTGTTCTTCTAGAGAAAGCTGGGGATGCTACCGCCACAGCTGAGGTTTTGTCATGCAGGTCTTCATGTTACAAAGAAGTCGGGGAGTATAAAAAGGCAGTGGCAGATTGTACCAAGATTCTTCAAAATGATGAAAGCAACGTAGCTATCCTGGTACAGCGTGCTCTCTTGTACGAGAGTATGGAAAAGTACAAACTTGGAGCTGAAGACCTTAGGACTGTGCTGAAGATTGATCCTAGTAATAGGATTGCTAGAAGCACCGTTCACCGGTTGGCTCAGATGGCTGGTTAG 1458 0.4986 MNSNYGQSNTNKSPSVSLNNFNFDFDLGIGSNRPRSLNDQKNPKASYSTTSTTTSSYSYPYSSTQPNKQPSWTHQPAPTQTTALPGGPPSMVGDIFGKSWGTTQPSAASKNIGVVDKNPNLFGDLVSSALGSKSTATNVPLKNAAPTPNKTSFSMGNMANSLPKTGTTPQNSASWASSSGGFSVNANKTPNLGGASMRNMSSGIGTSSNNKDPFSSLSGFGSKQSATLNSAAKGPKVASGDDGFGDFQNASKSSSDGFGDFQNASKPSSPAFPSAASPGIDFNFAGSAASTQSPVQGSGGSAMDMFFTAASSPAVGGAASASDGFGGQDDWGLDSEFGGGGHDVGGTTTELEGLPPPPAGVSGSTAKGKGMDNYKQGQFADAIKWFSWAIVLLEKAGDATATAEVLSCRSSCYKEVGEYKKAVADCTKILQNDESNVAILVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTVHRLAQMAG 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1568g00005 485 MobiDBLite consensus disorder prediction 246 272 - -
Vium1568g00005 485 MobiDBLite consensus disorder prediction 33 86 - -
Vium1568g00005 485 MobiDBLite consensus disorder prediction 23 103 - -
Vium1568g00005 485 MobiDBLite consensus disorder prediction 231 274 - -
Vium1568g00005 485 Gene3D Tetratricopeptide repeat domain 363 484 IPR011990 GO:0005515
Vium1568g00005 485 SUPERFAMILY TPR-like 367 477 IPR011990 GO:0005515
Vium1568g00005 485 PANTHER OS03G0340700 PROTEIN 1 484 - -
Vium1568g00005 485 SMART tpr_5 403 436 IPR019734 GO:0005515
Vium1568g00005 485 SMART tpr_5 437 470 IPR019734 GO:0005515
Vium1568g00005 485 SMART tpr_5 363 396 IPR019734 GO:0005515
Vium1568g00005 485 MobiDBLite consensus disorder prediction 160 210 - -
Vium1568g00005 485 MobiDBLite consensus disorder prediction 318 366 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1568g00005 362 482 Calmodulin-binding Proteins AT3G25230 27.692 1.02e-08 55.8