Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1568g00002 ATGGAAAACCCTTCTTTTCCTTTAGGCATGAACAACCAGAATTTTTCTTCAGACATTGATGCGTTTAAGCAGCAGAAGAAAAAGGCAGGGCGGAAGAAGATCGAGATAAAGAAGATCGAGAAGTCTAGCAACAAGCAAGTGACATTCTCAAAAAGAAGAACAGGGCTATTCAAAAAAGCGAGTGAACTCTGCATTTTGTGCAATGTCAATATAGCCATTATTGTGTTTTCTCCTGCTGAAAAATTGTTCTGCTTCGGTCATCCAGACTTCGAGGGCATTGTCGAAAGCTACCTTAAAGGTTCCAAAGTGTTTGATCCACCGGAATCAAGGGAGAGATCAGTGTCGTATGAAGAGTGCAACAAGCAATACGAGGAGGCAATGAAGAAGTTGGAGTTGGAAAAGAAGAATCTCAGAGAAACTGAAACTCTGGCTAATAAGGGGTGTAACAGAAGGTGGTGGGAGGACCCTATTGATCAGATGAGTCAAAGTGAGTTGGAACAGTTTATGGTCTCTGTTTATGAGTTGAGGAGAAAATTAGCCGAAAGGGGTGGTGAATTGTTGATGCAATCAATGATATAA 579 0.4128 MENPSFPLGMNNQNFSSDIDAFKQQKKKAGRKKIEIKKIEKSSNKQVTFSKRRTGLFKKASELCILCNVNIAIIVFSPAEKLFCFGHPDFEGIVESYLKGSKVFDPPESRERSVSYEECNKQYEEAMKKLELEKKNLRETETLANKGCNRRWWEDPIDQMSQSELEQFMVSVYELRRKLAERGGELLMQSMI 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1568g00002 192 PRINTS MADS domain signature 66 87 IPR002100 GO:0003677|GO:0046983
Vium1568g00002 192 PRINTS MADS domain signature 31 51 IPR002100 GO:0003677|GO:0046983
Vium1568g00002 192 PRINTS MADS domain signature 51 66 IPR002100 GO:0003677|GO:0046983
Vium1568g00002 192 Coils Coil 113 143 - -
Vium1568g00002 192 ProSiteProfiles MADS-box domain profile. 29 89 IPR002100 GO:0003677|GO:0046983
Vium1568g00002 192 SMART madsneu2 29 88 IPR002100 GO:0003677|GO:0046983
Vium1568g00002 192 SUPERFAMILY SRF-like 30 101 IPR036879 GO:0003677|GO:0046983
Vium1568g00002 192 Gene3D - 42 107 IPR036879 GO:0003677|GO:0046983
Vium1568g00002 192 FunFam Agamous-like MADS-box protein AGL62 41 105 - -
Vium1568g00002 192 PANTHER MADS BOX PROTEIN 31 179 - -
Vium1568g00002 192 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 38 85 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1568g00002 Vium-Chr1568 14387 15066 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1568g00002 26 177 Type I MADS-box Gene Family AT5G60440 39.881 2.97e-36 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vium1568g00002 SRF-TF 8e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1568g00002 - - vra:106766532 328.176