Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1568g00001 ATGGCGACTGGATTCGACAGTGCTCATGAGAGGAAGAAGAAGCTCGCAGTTTTGAGCGTCTCTTCTGTCCTCCTGATCGCGATGGTTGCCGCGGTGGCCGTTGGCATAAATGACGACGTCCATGGCGACCACACGGAAGAAGGCGACGGCAGCATCGCGAAATCTCAGAGGAGCGCCAACATGATATGTCAGTCGGCCGAATACAAAGAAACCTGCCAGAAGAGTCTCGCCAATGCTTCCCACGATAACACCGACCTGAAGCAACTTATCATCACCGCCTTCAACGCCACCTCTCGGGAGATTCACAGCAAAATTGAAAACTCAACGCTGTACCACGAGTTGGCCACCGACAACATGACCAAACAGGCCATGGAAATTTGCAAGGAAGTACTAGGTTACGCTGTGGATGATATAAACGAATCCGCTGCGACTTTGGAAAAGTTTGAGCTGAGCAAGATGAACGATTACGCCTATGACCTCAAGGTTTGGATCTCGGGTACCCTTGCCCACCAGCAAACATGCCTGGACGGGTTCGAGAACACGACCACCGAAGCTGGGAAGACAATGGCTAAGGTTCTGAACACGTCGTTGGAAATGAGCAGAAACGCGTTGGACATAGTGAACGGTGTGTCGTCTCTCTTCAAGGGTCTCAACTTGACCTCCTTCGGCTCCAGCAGCCACAGGAAGCTTCTCGCGGAAGAGACTTTGGTTGATGGGTTCCCATCGTGGGTGAGTGAAGGGCAGAGAAAAATTCTGGAATCTACTGATATCACCCCAAATGTAGTGGTGGCTCAGGATGGGAGTGGACAGGTGACCACAATCCACGAGGCTCTCAAACTGGTGCCTAAGAAGAACAAGACGCCTTTTGTGATTTACGTCAAGGCCGGTGTCTACAAGGAGTACGTTAACTTGAACAAGCACATGTCCTTTGTCACCATGATCGGCGATGGCCCCACCCTCACCAGAATCACCGGCGATAAAAACTACGTCGATGGCTTCCAAACCCTACAACACCCCGCAAACCTTGGCCAGGTGTGGAACGCTGCAAACTTTCATGGCGAAGAACATTGGTTCGAGAACACGGCAGGAGCGGAGAAGCACCAAGCTGTGGCTCTGAGGGTAACAGCTGACAAGGCAGTGTTCTACAACTGTCACATGGACGGCTACCAAGACACCCTCTACACCCAGTCCCAGCGCCAGTTTTACCGCGACTGCATTGTCACCGGCACCATCGACTTTGTCTTCGGGGACGCCGTCGCCGTTTTCCAGAACTGCAAGTTCATCGCGAGGAAGCCAATGGAGAACCAGCAGTGCATGGTGACCGCCGGCGGAAGGACCAAGATCGACAGCCCCAGCGCCCTGGTGTTCCAGAGCTGCATCTTCACCGGCGAGCCAGACCTGAAGGCCGTGACCCCGAAGATCGCGTACCTCGGGAGGCCCTGGAGGCTTTTCTCGAAGGTGGTGATAATGGACTCCGAAATCGACGACATATTCGCTCCCGAAGGGTACATGCCCTGGATGGGAAGCGCCTTCAAAGATACCTGCACCTACTACGAGTTCAACAACAGGGGTCCCGGTGCGGACACAACCGGAAGAATCACCTGGCCAGGGTTTAAGGTGATTACCCCTGTTGAGGCTGCCGATTACTACCCCGGGAAGTTCTTTGAGCTGGCTAACTCCACTGACCGTGACGCTTGGATCCTTGACTCTGGGGTACCCTATGCCCTTGGCCCTCTTCCAGCATCCACCGCCCAGCCCGCAGTTTAA 1767 0.541 MATGFDSAHERKKKLAVLSVSSVLLIAMVAAVAVGINDDVHGDHTEEGDGSIAKSQRSANMICQSAEYKETCQKSLANASHDNTDLKQLIITAFNATSREIHSKIENSTLYHELATDNMTKQAMEICKEVLGYAVDDINESAATLEKFELSKMNDYAYDLKVWISGTLAHQQTCLDGFENTTTEAGKTMAKVLNTSLEMSRNALDIVNGVSSLFKGLNLTSFGSSSHRKLLAEETLVDGFPSWVSEGQRKILESTDITPNVVVAQDGSGQVTTIHEALKLVPKKNKTPFVIYVKAGVYKEYVNLNKHMSFVTMIGDGPTLTRITGDKNYVDGFQTLQHPANLGQVWNAANFHGEEHWFENTAGAEKHQAVALRVTADKAVFYNCHMDGYQDTLYTQSQRQFYRDCIVTGTIDFVFGDAVAVFQNCKFIARKPMENQQCMVTAGGRTKIDSPSALVFQSCIFTGEPDLKAVTPKIAYLGRPWRLFSKVVIMDSEIDDIFAPEGYMPWMGSAFKDTCTYYEFNNRGPGADTTGRITWPGFKVITPVEAADYYPGKFFELANSTDRDAWILDSGVPYALGPLPASTAQPAV 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1568g00001 588 ProSitePatterns Pectinesterase signature 2. 407 416 IPR033131 -
Vium1568g00001 588 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 61 209 IPR035513 -
Vium1568g00001 588 FunFam Pectinesterase 55 211 - -
Vium1568g00001 588 CDD PMEI-like_3 62 212 - -
Vium1568g00001 588 FunFam Pectinesterase 4 257 578 - -
Vium1568g00001 588 NCBIfam pectinesterase inhibitor domain 53 209 IPR006501 GO:0004857
Vium1568g00001 588 Pfam Pectinesterase 260 554 IPR000070 GO:0030599|GO:0042545
Vium1568g00001 588 SMART PMEI_2 54 206 IPR006501 GO:0004857
Vium1568g00001 588 ProSitePatterns Pectinesterase signature 1. 285 304 IPR018040 -
Vium1568g00001 588 PANTHER PECTINESTERASE 24 567 - -
Vium1568g00001 588 SUPERFAMILY Pectin lyase-like 258 555 IPR011050 -
Vium1568g00001 588 Pfam Plant invertase/pectin methylesterase inhibitor 61 206 IPR006501 GO:0004857
Vium1568g00001 588 Gene3D Invertase/pectin methylesterase inhibitor family protein 54 210 IPR035513 -
Vium1568g00001 588 Gene3D - 257 578 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1568g00001 Vium-Chr1568 4212 6317 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1568g00001 1 588 Carbohydrate Esterase AT3G05610 43.144 1.97e-176 513
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1568g00001 K01051 - gmx:100820068 890.567