Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1566g00019 ATGGTTTTTCCAAAACCTTCTTCTGAATCTGACCTCTTTCTTCATTCCAACTTTGCCTCTTGTTATGGTCGAGACTCTCTTCCCAGGTTCACCATGCCTCAGAACTCCATGCCTAAAGAGGCAGCGTACCAGAACATACATGACGAGTTACAGCTTGATGCTATTCCCAAGCTTAACTTGGCTTCCTTTGTCACCACTTCCATGGAGGAGGAGTGCAACAAGCTCATCATGGAATCTATCAACAAGAACTATGTAGACATGGACGAGTATCCTGCCACCACTGACCTTCATAACCGGTGTGTGAATATGATAGCACGTTTGTTCCATGCTGATATCGGAGAAGATGAGAATGGTATTGGAGCAGGAACTGTTGGGTCATCAGAAGCAATAATGCTGGCAGGACTTGCATTCAAGAAGAAGTGGCAGAACAAACGTAAGGCAGAAGGCAAACCTTATGATAAGCCTAATTTGGTCACTGGCTCCAATGTACAAGTATGTTGGGAGAAATTTGCCAGGTATTTTGAGGTGGAGTTGAGGGAAGTGGAGGTGAGAGAAGGATACTACGTTATGGATCCTGCCAAAGCAGTCGAGCTGGTTGACGAAAACACTATTTGTGTGGCTGCAATATTGGGTTCAACATACAACGGAGAGTTTGAAGACGTGAAGCTCTTGAATGACTTGCTGCTACAAAAGAATAAGCAAACTGGATGGGAAACTCCTATTCATGTGGATGCTGCAAGTGGTGGTTTCATTGCTCCATTCCTATATCCAGAGCTGGAGTGGGATTTCAGGCTGCCATTGGTGAAGAGCATAAACGTGAGTGGACACAAATATGGGCTTGTTTATGCTGGTATTGGTTGGGTTATTTGGAGGACAAAGGATGACTTACCAGAAGACCTTGTGTTCCATATCAATTACCTTGGAGCTGACCAACCAACCTTCACCCTCAATTTCTCCAAAGGTTCTAGTCAGATCATTGCTCAATATTATCAACTAATTCGACTTGGCCAAGAGGGTTATCGGAGCATAATGGAGAATTGCAGAGAAAACGCAATGGTGGTGAAGGAACATTTAGAGAAGAGTGGACGCTTTAACATACTCTCAAAAGACGACGGTGTTCCAGTGGTGGCATTTTCTCTGAAAGACAGAAGTCAGTACGATGAGTACAAGATATCAGAGATGCTGCGGCGACACGGTTGGATCGTGCCAGCTTATCCAATGCCACCTGCTGCTCAGCACATCAATGTGCTCCGCGTGGTGATCAGGGCTGAGTTTTCACGTACCCTTGCTCAACGCCTTGTATTTGACATCAACAATGTGCTGCATGAACTTGAAAAACTACATCTTCCCAAAGTGATCAACAACATTACGGAAGAGAAGAAGGAGTTGGTTGAAAGTGCGGTTAAGAAAACAGCATTGGATGCACATAGGGAAATCATTGCTCAAGAATCGCACAAGCGTCAGAAAATCATGGCTGCGTAG 1482 0.4474 MVFPKPSSESDLFLHSNFASCYGRDSLPRFTMPQNSMPKEAAYQNIHDELQLDAIPKLNLASFVTTSMEEECNKLIMESINKNYVDMDEYPATTDLHNRCVNMIARLFHADIGEDENGIGAGTVGSSEAIMLAGLAFKKKWQNKRKAEGKPYDKPNLVTGSNVQVCWEKFARYFEVELREVEVREGYYVMDPAKAVELVDENTICVAAILGSTYNGEFEDVKLLNDLLLQKNKQTGWETPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRTKDDLPEDLVFHINYLGADQPTFTLNFSKGSSQIIAQYYQLIRLGQEGYRSIMENCRENAMVVKEHLEKSGRFNILSKDDGVPVVAFSLKDRSQYDEYKISEMLRRHGWIVPAYPMPPAAQHINVLRVVIRAEFSRTLAQRLVFDINNVLHELEKLHLPKVINNITEEKKELVESAVKKTALDAHREIIAQESHKRQKIMAA 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1566g00019 493 SUPERFAMILY PLP-dependent transferases 18 446 IPR015424 -
Vium1566g00019 493 Coils Coil 480 493 - -
Vium1566g00019 493 Gene3D - 1 65 - -
Vium1566g00019 493 PANTHER GLUTAMATE DECARBOXYLASE 5 486 IPR010107 GO:0004351|GO:0006536|GO:0030170
Vium1566g00019 493 Gene3D - 361 447 - -
Vium1566g00019 493 FunFam Glutamate decarboxylase 66 360 - -
Vium1566g00019 493 CDD DOPA_deC_like 59 437 - -
Vium1566g00019 493 FunFam Glutamate decarboxylase 361 448 - -
Vium1566g00019 493 Gene3D - 66 360 IPR015421 GO:0003824
Vium1566g00019 493 NCBIfam glutamate decarboxylase 17 444 IPR010107 GO:0004351|GO:0006536|GO:0030170
Vium1566g00019 493 Pfam Pyridoxal-dependent decarboxylase conserved domain 33 381 IPR002129 GO:0016830|GO:0019752|GO:0030170
Vium1566g00019 493 FunFam Glutamate decarboxylase 4 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1566g00019 Vium-Chr1566 449223 451773 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1566g00019 1 481 Calmodulin-binding Proteins AT5G17330 75.154 0.0 762
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1566g00019 K01580 - gmx:100782330 926.391