Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1566g00018 ATGGTTTTTCCAAAACCTTCTTCTGAATCTGACCTCTTTCTTCATTCCAACTTTGCCTCTTGTTATGGTCGAGACTCTCTTCCCAGGTTCACCATGCCTCAGAACTCCATGCCTAAAGAGGCAGCGTACCAGAACATACATGACGAGTTACAGCTTGATGCTATTCCCAAGCTTAACTTGGCTTCCTTTGTCACCACTTCCATGGAGGAGGAGTGCAACAAGCTCATCATGGAATCTATCAACAAGAACTATGTAGACATGGACGAGTATCCTGCCACCACTGACCTTCATAATCGGTGTGTGAACATGATAGCACGTTTGTTCCATGCTGACGTTGGAGAAGATGAGAATGGTATTGGAGCAGGAACTGTTGGGTCATCAGAAGCAATAATGCTGGCAGGACTTGCATTCAAGAAGAAGTGGCAGAACAAACGTAAGGCAGAAGGCAAACCTTATGATAAGCCTAATTTGGTCACTGGCTCCAATGTACAAGTATGTTGGGAGAAATTTGCCAGGTATTTTGAGGTGGAGTTGAGGGAAGTGGAGGTGAGAGAAGGATACTACGTTATGGATCCTGCCAAAGCAGTCGAGCTGGTTGACGAAAACACTATTTGTGTGGCTGCAATATTGGGTTCAACATACAATGGAGAGTTTGAAGACGTGAAGCTCTTGAATGACTTGCTGCTACAAAAGAACAAGCAAACTGGATGGGAAACTCCTATTCATGTGGATGCTGCAAGTGGTGGTTTCATTGCTCCATTCCTATATCCAGAGCTGGAGTGGGATTTCAGGCTGCCATTGGTGAAGAGCATAAACGTGAGTGGACACAAATATGGGCTTGTCTATGCTGGTATTGGTTGGGTTATTTGGAGGACAAAGGATGACTTACCAGAAGACCTTGTGTTCCATATCAATTACCTTGGAGCTGACCAACCCACCTTCACCCTCAATTTCTCCAAAGGTTCTAGTCAGATCATTGCTCAATATTATCAACTAGTTCGCCTTGGCCAAGAGGGTTATCGGAGCATAATGGAGAATTGCAGAGAAAATGCAATGGTGCTGAAAGATAATCTAGAGAAGAGTGGACGCTTTAACATACTATCGAAAGACGATGGTGTTCCAGTGGTGGCATTTTCTCTGAAAGATCGAAGCCAGTACGATGAGTACAAGATATCGGAGATGTTGCGGCGCCACGGTTGGATAGTGCCAGCTTATCCAATGCCACCTGCTGCTCAGCACATTAATGTGCTCCGTGTGGTGATCAGGGCTGAGTTTTCACGTACCCTTGTTCAGCGCCTTTCGTTTGATATACACAATGTGCTGCATGAGCTTGAAAAGGTGCATCCCACAATGACTAATAACACTGAGGATGTGAAAAAATCCTTGGTTGATTCTGTAGTCAAGAAAAATGCCATGGATACACAGAAAGAAATCATTGGTCAAGAATCCAACAAGCGTCAGAAAATCATGGCTGCCTAG 1479 0.4462 MVFPKPSSESDLFLHSNFASCYGRDSLPRFTMPQNSMPKEAAYQNIHDELQLDAIPKLNLASFVTTSMEEECNKLIMESINKNYVDMDEYPATTDLHNRCVNMIARLFHADVGEDENGIGAGTVGSSEAIMLAGLAFKKKWQNKRKAEGKPYDKPNLVTGSNVQVCWEKFARYFEVELREVEVREGYYVMDPAKAVELVDENTICVAAILGSTYNGEFEDVKLLNDLLLQKNKQTGWETPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRTKDDLPEDLVFHINYLGADQPTFTLNFSKGSSQIIAQYYQLVRLGQEGYRSIMENCRENAMVLKDNLEKSGRFNILSKDDGVPVVAFSLKDRSQYDEYKISEMLRRHGWIVPAYPMPPAAQHINVLRVVIRAEFSRTLVQRLSFDIHNVLHELEKVHPTMTNNTEDVKKSLVDSVVKKNAMDTQKEIIGQESNKRQKIMAA 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1566g00018 492 Pfam Pyridoxal-dependent decarboxylase conserved domain 33 381 IPR002129 GO:0016830|GO:0019752|GO:0030170
Vium1566g00018 492 NCBIfam glutamate decarboxylase 17 444 IPR010107 GO:0004351|GO:0006536|GO:0030170
Vium1566g00018 492 FunFam Glutamate decarboxylase 66 360 - -
Vium1566g00018 492 Gene3D - 66 360 IPR015421 GO:0003824
Vium1566g00018 492 PANTHER GLUTAMATE DECARBOXYLASE 5 485 IPR010107 GO:0004351|GO:0006536|GO:0030170
Vium1566g00018 492 FunFam Glutamate decarboxylase 361 448 - -
Vium1566g00018 492 Gene3D - 1 65 - -
Vium1566g00018 492 Gene3D - 361 447 - -
Vium1566g00018 492 SUPERFAMILY PLP-dependent transferases 18 445 IPR015424 -
Vium1566g00018 492 FunFam Glutamate decarboxylase 4 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1566g00018 Vium-Chr1566 449223 465410 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1566g00018 1 479 Calmodulin-binding Proteins AT5G17330 73.814 0.0 753
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1566g00018 K01580 - gmx:100782330 901.738