Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1566g00010 ATGTCTTTGGCTGCTCCGAGTTCCCTTTTGAAGGTGGAGGAAATACAAGGAAGAGGGAGGGGAATGGTTGCATCTCAGCCTCTTAAAGCTGGTCAAATTGTCCTGAAAGACTCCCCCATTCTGCTGTATTCAGCTTTGCCCTTGATCAGACAGTCTTTGTCAGCGTCATCCTCTGCCTCAACTTCATGTTTCTGTGATCACTGCTTCAGAACCTTGCCTCCATTTTTACTGGGAGATTCTTCGTCATCCACAGTTTTGTGCCCCAATTGTCGCTACCATCGTTTCTGCAGCTCAAGTTGTCTTTCAAAGGCATCGAACTCCTCCCATTCTTCTTGGGTATGTCAAGCGTTATCTAGTCTCAGATCCAATTCTCTACTGCTTGAACAGCCGCTTGAGCGCCAAGTCCAGGCTAATTTTCTCATAGCTGCCTACAATCTTGCCAATATCTCCCCTTCAGACTTCCAAATTTTGCTTTCTCTCCAGGGTTCTCCTGATGATACCACCATTGCTGCATCCAAGTTCCTACACCCCCTTATTTCATCTCTCTGCTCACTATCTATCATTAGTCCCCAGAATGGATTTTCTTTAGAACTCACCTCTTTACTTCTTGTCAAGGACAAGCTCAATGCCTTTGGAATAATGCAGCCCTTCTCCGCAGATGACGACCAGAGGTCTGTCAGAGCCTATGGTATTTACCCCTATGCTTCCTTTTTTAACCATGACTGCCTTCCCAATGCCTGCAGATTTGATTATGTGGACATCAATCCACATGAAGACAGCCATAATACTGACTTTATTATTAGGATGATTCATGATGTTCCCCAAGGTAGGGAGATTTGTTTGAGTTATTTCCCTGTGAATGAAAACTATTCTAGTAGGCAAAAGAGACTGATTGACGACTATGGCTTCTCCTGTAATTGTGATCGATGTAATGTGGAGTCAAATTGGTCAGATAATGATAGTGTTGAAGATAATGCTGAGGATGAGGAGGAGGTTATGGATGAGGACCAATCTGAAACTATGGAAGCGTCAGACACTGATAAACATGCTCTTGAAGATAATAATGATTTCCCACATGCATATTTCTTTTTAAAATACATGTGTGATAGAACGAATTGCTGGGGAACATTAGCTCCATTACCTCCGGAGGGTGATACTCCATCTAATTTCATGGAATGCAATGTCTGTGGAAAATTGAAGAGTGACGATACCTTTGATGTAGATGAAGGTCTTATGGAGGACTAA 1245 0.4297 MSLAAPSSLLKVEEIQGRGRGMVASQPLKAGQIVLKDSPILLYSALPLIRQSLSASSSASTSCFCDHCFRTLPPFLLGDSSSSTVLCPNCRYHRFCSSSCLSKASNSSHSSWVCQALSSLRSNSLLLEQPLERQVQANFLIAAYNLANISPSDFQILLSLQGSPDDTTIAASKFLHPLISSLCSLSIISPQNGFSLELTSLLLVKDKLNAFGIMQPFSADDDQRSVRAYGIYPYASFFNHDCLPNACRFDYVDINPHEDSHNTDFIIRMIHDVPQGREICLSYFPVNENYSSRQKRLIDDYGFSCNCDRCNVESNWSDNDSVEDNAEDEEEVMDEDQSETMEASDTDKHALEDNNDFPHAYFFLKYMCDRTNCWGTLAPLPPEGDTPSNFMECNVCGKLKSDDTFDVDEGLMED 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1566g00010 414 CDD SET_SMYD 208 310 - -
Vium1566g00010 414 Gene3D SET domain 21 310 IPR046341 -
Vium1566g00010 414 SMART set_7 8 290 IPR001214 GO:0005515
Vium1566g00010 414 Gene3D - 128 210 - -
Vium1566g00010 414 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ASHR2 1 409 IPR044238 -
Vium1566g00010 414 ProSiteProfiles SET domain profile. 8 284 IPR001214 GO:0005515
Vium1566g00010 414 SUPERFAMILY SET domain 10 311 IPR046341 -
Vium1566g00010 414 Coils Coil 319 339 - -
Vium1566g00010 414 MobiDBLite consensus disorder prediction 317 351 - -
Vium1566g00010 414 Pfam SET domain 19 283 IPR001214 GO:0005515
Vium1566g00010 414 Gene3D - 64 123 - -
Vium1566g00010 414 MobiDBLite consensus disorder prediction 320 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1566g00010 Vium-Chr1566 363501 366637 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vium1566g00010 SET 8.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1566g00010 - - gmx:100783406 713.375