Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1566g00004 ATGGAGCTACTACACCAAGAGCAACAACCCGTTTCGCTTTCCCTTTCCTTTTCCCTTTCTGTTGTCTCTGATGCTTCTGCTCCTTCCTCTTCATCGGAACAGTCCAGTCCAGCAGATGCAGTAATCTTCTTTGGTCTCAGTTTGGCTCTGGGGATTGCTTGTAGGCACCTCTTGCGTGGGACTAGAGTTCCTTACACCGTTGCCTTGCTCATAATTGGCATTATACTTGGATCTATAGAATATGGTACTCATCATCGGCTGGGAAAGATTGGAGATGGAATTCGTCTTTGGTCAGAGATTGATCCAGACCTTCTGTTAGCTGTTTTTCTTCCTGCTCTCCTGTTTGAAAGCTCATTCTTAATGGAAGTTCACCAAATTAAGAGGTGTCTTGCACAAATGATCATACTAGCTGGTCCTGGTGTTGCGCTTTCAACTGTTTGTCTTGGAGTTGTCATGAAGCTTACTTTTCCATACAACTGGGGTTGGAAAACATCACTGTTGCTTGGGGGACTTCTGAGTGCAACAGATCCTGTTGCTGTTGTGGCTTTATTGAAAGATCTTGGTGCCAGCAAAAAACTAAGCACCATAATTGAAGGGGAATCCTTGATGAATGATGGGACGGCTATTGTAGTTTATACTCTTTTCTATCGGATGGTTCTTGGAGAGACCTTCAATTGGGCTGCTATAATCAAATTTCTAGCACAAGTTTCACTTGGAGCTGTAGGGATGGGTCTTGCTTTTGGGATTGCATCTGTTTTGTGGCTAGGGTTTATTTTTAATGATACAGTGATTGAAATTGCTCTAACATTTGCTGTTAGCTACATTGCTTATTTCACTGCCCAGGAGGGTTCAGGTGTCTCAGGTGTTTTGACGGTGATGTCTTTGGGAATGTTTTATGCTGCATTTGCAAGGACAGCTTTTAAGGGTGAAAGTCAACAAAGCTTACATCACTTTTGGGAAATGATTGCTTATATAGCTAATACCTTAATTTTCATTTTGAGTGGAGTTGTCATAGCTGAAGGAATACTTGGTGACAACAATGTTTTCTATCATGGAACATCATGGACCCACCTCTTGCTTCTCTATGTTTATGTACAAGTGTCTCGATGCATTGTTGTTGGAGTATTGTTTCCCTTTCTTAAATATTTTGGATATGGTTTGGATTGGAAAGAAGCTATTATTCTCATCTGGTCAGGATTGCGAGGGGCAGTTGCCTTGGCACTTTCATTATCAGTTAAGCGTTCAAGTGGAAAATCAATTGAGTTGACTCCGGAGACAGGAACACTGTTTGTTTTCTTCACTGGTGGAACTGTGTTTTTAACCCTTATAGTAAATGGGTCAACCACACAACTCATGTTACGTTACCTTGGCATGGATAGTTTATCAGCAGCTAAGAGACGTATCCTTGACTTTACAAAGCATGAAATGTTGGACAAGGCATTGGAGGCTTTCAGTGAACTTGGAGATGATGAGGAACTTGGGCCTGCTGACTGGCCCACAGTGAAGAGATACATCTCTTGCTTAAATGACATTGAAGGTGAACGTGTTCACCCTCATGGTGCAACTGAAAATGATAGTCACCTAGATCCTATGAACTTGAAAGATATACGAGTACGACTACTGAATGGTGTACAAGCTGCTTACTGGGAGATGCTTGAGGAAGGAAGGATTTCTCAAACAACAGCTAATGTCCTAATGTTATCCGTAGAGGAAGCCATAGATTTGGCTTCATCTGAGTCTCTATGCGACTGGAAAGGTTTAAAATCTAACGTTCACTTCCCAAGTTACTACAAGTTTCTACAGTCCAATATGTTCCCACCGAAGCTAGTGACATACTTCACTGTACAAAGGTTGGAATCTGCATGTTATATTTGTGCTGCATTTCTTCGTGCTCACAGAATTGCTCGACAACAATTACATGACTTCATAGGTGACAGCGATATTGCTTCTGCTGTCATCAATGAAAGTGTTGTAGAAGGAGAAGAAGCACGGAAGTTCCTAGAAGATGTTAATGTGACATACCCTCAGGTTCTGCGTGTTGTAAAAACAAGGCAAGTTACATATGCAGTGCTACATAATTTAATTGAATATGTTCAAAACCTTGAGAAGACTGGGATATTGGAAGAGAAAGAGATGCTACATCTCCATGATGCTGTCCAGACTGATTTGAAGAAATTACTTAGAAATCCTCCTTTGGTTAAGCTTCCTAAAATAAGTAGCATACATCCTATGTTGGGTGCTCTCCCATCTTCGGTTCGTGAATCACTTGCCAACTGTACCAAGGAAATGATGAAATTCCGTGGTGTGACACTTTACAAGGAAGGTGCAAAGTCAAATGGTATTTGGTTAATTTGTAATGGAGTAGTGAAGTGGGAAAGCAAGGTGACACCAACCAAACACTCATTTTATCCTACTTTTACTCATGGGAGTACATTGGGTCTTTATGAAGTGCTGACTGGAAGACCATATATCTGTGATGTCATCACAGATTCTGTAGTATTCTGCATTTTTCTTGAAGCTGGCAAGATAATATCATGTCTCAAATCAGATCCTTCAACAGAAAACTTCCTGTGGGAGGAAAGTGCTATTTTCCTTTCCAAACTATTGGTTCCTCAGATATTTGGGAAACTGGCTATGCAAGATTTAAGAGCTCTTATTGCAGATCCAGAGAGATCTAGGATGACCATATTCATAAGAGGGGAAACAATAGAAATCCCTCATCATTCAGTTGCCCTCTTACTAGAAGGATATGTAAAAGCTCAAGGTCGTCAAGAACTCATAACAGCACCAGCAGCGCTGCTTCCTTCATCCGGGAATCTAAGCTTCCAAAATTTGGCAGGATCAGGTTCCAAGGGAGATAGTTTTACTCATCAAGGATCTATTTATCTAGTTGAAACTACAGCAAGGGTAATTCTTTTTGACATTCCAGCATCTGAGACCGATGCTTCTCTTGTGAGAAGGTCAAGTTCACTGTTACTGCATGCCGGGGATCATCCTCATAGATCTTTCCGTCGAAAACATAGTGGTCTTATGAGTTGGCCCGAACATTTCTACAAACACAAAAACAATGAGCAGATATCTGAAGGGATTGAGCGACAAACCTATAGTTTGTCTGCAAGGGCAGTGCATCTGAGCATTTATGGGAGTATGGTGCGCATCCCTCGGCGGAGTAGAAGTTTGTCAAGCCATCATGGTAGAGAACCTCATAGTCTATCCTATCCAACCATGGAGTCCCACCGTCCACTTGTCTCAGTGAAATCAGAAGGAGCTGCAACTGCTAAGAAGGTCCATGAGGTCACAAGACAAGTTACAAATCCACCTTCACAAAGAACAGAACAAAGAAAACATCATCATGGTCATGCAGTAAATTCAAGCGATGATGAAGATGTTATTGTAAGGATTGATTCACCGAGCACTCTATCTTTTCGCTAG 3432 0.4152 MELLHQEQQPVSLSLSFSLSVVSDASAPSSSSEQSSPADAVIFFGLSLALGIACRHLLRGTRVPYTVALLIIGIILGSIEYGTHHRLGKIGDGIRLWSEIDPDLLLAVFLPALLFESSFLMEVHQIKRCLAQMIILAGPGVALSTVCLGVVMKLTFPYNWGWKTSLLLGGLLSATDPVAVVALLKDLGASKKLSTIIEGESLMNDGTAIVVYTLFYRMVLGETFNWAAIIKFLAQVSLGAVGMGLAFGIASVLWLGFIFNDTVIEIALTFAVSYIAYFTAQEGSGVSGVLTVMSLGMFYAAFARTAFKGESQQSLHHFWEMIAYIANTLIFILSGVVIAEGILGDNNVFYHGTSWTHLLLLYVYVQVSRCIVVGVLFPFLKYFGYGLDWKEAIILIWSGLRGAVALALSLSVKRSSGKSIELTPETGTLFVFFTGGTVFLTLIVNGSTTQLMLRYLGMDSLSAAKRRILDFTKHEMLDKALEAFSELGDDEELGPADWPTVKRYISCLNDIEGERVHPHGATENDSHLDPMNLKDIRVRLLNGVQAAYWEMLEEGRISQTTANVLMLSVEEAIDLASSESLCDWKGLKSNVHFPSYYKFLQSNMFPPKLVTYFTVQRLESACYICAAFLRAHRIARQQLHDFIGDSDIASAVINESVVEGEEARKFLEDVNVTYPQVLRVVKTRQVTYAVLHNLIEYVQNLEKTGILEEKEMLHLHDAVQTDLKKLLRNPPLVKLPKISSIHPMLGALPSSVRESLANCTKEMMKFRGVTLYKEGAKSNGIWLICNGVVKWESKVTPTKHSFYPTFTHGSTLGLYEVLTGRPYICDVITDSVVFCIFLEAGKIISCLKSDPSTENFLWEESAIFLSKLLVPQIFGKLAMQDLRALIADPERSRMTIFIRGETIEIPHHSVALLLEGYVKAQGRQELITAPAALLPSSGNLSFQNLAGSGSKGDSFTHQGSIYLVETTARVILFDIPASETDASLVRRSSSLLLHAGDHPHRSFRRKHSGLMSWPEHFYKHKNNEQISEGIERQTYSLSARAVHLSIYGSMVRIPRRSRSLSSHHGREPHSLSYPTMESHRPLVSVKSEGAATAKKVHEVTRQVTNPPSQRTEQRKHHHGHAVNSSDDEDVIVRIDSPSTLSFR 1143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1566g00004 1143 Gene3D Jelly Rolls 740 869 IPR014710 -
Vium1566g00004 1143 MobiDBLite consensus disorder prediction 1056 1143 - -
Vium1566g00004 1143 ProSiteProfiles cAMP/cGMP binding motif profile. 744 839 IPR000595 -
Vium1566g00004 1143 Gene3D - 162 213 - -
Vium1566g00004 1143 PANTHER SODIUM/HYDROGEN EXCHANGER 26 808 IPR018422 GO:0006812|GO:0015385|GO:0016020|GO:1902600
Vium1566g00004 1143 Pfam Sodium/hydrogen exchanger family 42 454 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Vium1566g00004 1143 SUPERFAMILY cAMP-binding domain-like 742 858 IPR018490 -
Vium1566g00004 1143 MobiDBLite consensus disorder prediction 1118 1133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1566g00004 Vium-Chr1566 128045 164425 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1566g00004 37 1143 Antiporters AT2G01980 64.139 0.0 1399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1566g00004 K14726 - gmx:100789429 1914.43