Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1566g00001 ATGGAGAAAAACTATGTTCAGCTTTTGCCTCGTCTCACTGTGACACTTCTAGTGATCACTGTTTTGTTTCCTGTGACTGAATGTTCGGCAGTTTCCTCCATCAAGACTGATGCGCAGGCTCTTCTGATGTTCAAAAGGATGATTCAGAAGGATCAAAGTGGAGTTTTGTCAGGGTGGAAGCTCAATAAGAATCCATGCAGCTGGTATGGAGTCTCTTGCACCCTTGGAAGAGTTACTCAGCTTGATATTAGTGGAAATAATGACCTTGCTGGGACAATATCTCTTGACCCTTTGTCTTCTTTAGATATGTTATCTGTTCTCAAACTGTCTTTGAATTAATTTTCTGTAAATTCTACCTCTTTGCTTCAGCTCCCTTATGGTTTGACACAGCTTGATCTATCCTTTGGAGGAGTTACAGGCCCTGTCCCTGAGAACCTTTTCTCCAAGTGTCCGAATCTTGTTGTTGTTAATCTTTCGTACAACAATTTAACAGGCCCTATTCCTGAAAATTTCTTACAAAATTCTGATAAACTGCAGACCCTTGACCTCTCTTCCAACAACCTGTCAGGGTCTATTTTTGGCCTTAAAATGGATTGCATTTCCTTGTTGCAACTTGATCTATCTGGAAACCGCTTGTCAGACTCCATTCCACTCTCTTTGACAAACTGTACCAGCCTTCAAAGTTTGAATTTAGCTAACAATATGATTTCTGGGGGAATTCCCAAAGGTTTGGGTCAGCTAAACAAACTACAGACTCTGGATCTTTCCCACAACCAACTCACAGGCTGGATCCCTTCTGAGCTGGGAAACGCTTGTGCTTCCCTTTTAGAGGTTAAACTTTCTTTCAACAACATCTCCGGGTCAATCCCATCTGGTTTCTCCTCATGCACTTTGCTTCAACATCTTGACATTGCTAACAACAACCTGTCGGGACAGTTAGCAGATTCAATCTTTCAGAACCTCGGATCATTGCAGGAACTGTGGCTGGGGAATAATGCTATCAGTGGTCAGTTTCCATCTTCATTATCTTCCTGCAAAAAGTTGAAGATTGCGGACTTCAGCTCAAACAAAATTTATGGATCTATCCCCAGGGATTTATGTCCTGGGGCAGCCTCACTTGAGGAGCTGAGAATGCCAGATAATCTTATTACAGGTGAAATTCCAGCTGAACTGTCAAAGTGCTCACAGCTGAAGACACTTGATTTTAGTCTGAACTATCTCAATGGTACAATTCCAGAGGAGCTTGGACAACTTGAAAATCTTGAGCAGCTAATTGCATGGTTCAATGGCTTGGAAGGAAAAATTCCTTCAAAACTGGGCCAGTGCAAGAATCTTAAGGATCTCATACTGAATAACAATCATCTCACTGGTGGAATTCCCATTGAGTTATTCAATTGCAGCAATCTGGAATGGATATCACTGACAAGCAATGAGCTTAGTGGTGAAATACCGCGTGAGTTTGGTCTCTTGACAAGGTTAGCAGTTCTGCAGCTTGGAAACAACAGCTTGACTGGCGAGATACCAGCAGAGCTAGCGAATTGCAGCAGTTTGGTGTGGTTGGACTTGAACAGCAACAAGCTCACTGGAGAGATCCCTTCAAGACTTGGAAGACAGCTAGGAGCAAAATCCTTGTTTGGGATCCTTTCAGGGAACACTTTGGTGTTTGTAAGAAATGTTGGAAACTCATGCAAAGGAGTAGGAGGTTTGCTAGAATTCTCTGGTATTCGACCTGAAAGGCTCTTGCAGGTTCCAACATTGAGGACTTGTGACTTCACAAGACTCTATTCTGGTCCTGTCCTCAGCTTGTTCACCAAGTACCAGACTCTGGAGTATCTTGATCTTTCATATAACGAGCTTCGCGGAAAAATCCCAGATGAATTCGGAGACATGGTGGCTTTACAAGTTCTTGAGTTATCTCACAATCAGCTATCTGGAGAAATCCCTTCAACGCTTGGCCAACTAAAAAATTTGGGTGTGTTCGATGCATCACACAACAGATTGCAAGGACATATTCCAGACTCATTCTCAAACCTCTCATTCTTGGTTCAAATTGATCTATCTAACAACGAGTTAACAGGGCAAATTCCCTCTAGGGGACAACTGAGTACACTTCCGGCTTCCCAGTATGCAAATAACCCTGGCCTTTGTGGTGTACCATTGCCTGACTGCAAGAGCGACAATAGCCAACCCACAACAAATCCAACTGATGATGCTGGCAAAGGGGGCCATAAAACAGCAACTGCAACATGGGCAAACAGCATTGTCATGGGAACTCTCATATCTGTTGCTTCTGTATGTATTTTAATCGTGTGGGCAATTGCAATGCGCGCAAGGAGAAAGGAGGCCGAAGAAGTCAAGATGCTCAATAGCTTACAAGCATGCCATGCTGCTACAACATGGAAAATCGACAAAGAGAAAGAGCCACTAAGCATCAATGTTGCAACATTTCAGAGGCAGCTGAGGAAACTCAAATTTTCCCAGTTGATTGAAGCAACTAATGGGTTCTCGGCAGAAAGCCTCATTGGGTGTGGAGGTTTTGGCGAAGTGTTCAAGGCCACACTGAAAGACGGGTCAAGTGTGGCCATAAAGAAGCTGATTCGACTGAGCTGCCAGGGTGATCGAGAATTCATGGCAGAGATGGAAACATTGGGGAAGATCAAGCACAGAAATCTGGTTCCTCTGTTAGGATACTGCAAAGTGGGGGAAGAGAGGCTCCTTGTGTACGAATACATGGAATATGGAAGCCTAGAGGAGATGCTTCATGGGAGAATAAAGACGCGTGATCGGCGCATTTTGACATGGGAAGAAAGGAAAAAGATTGCAAGAGGTGCAGCTAAAGGGCTTTGTTTCCTGCACCACAATTGCATCCCTCACATAATACACAGAGATATGAAGTCAAGCAATGTGCTACTTGACCATGAAATGGAGTCGAGAGTCTCAGATTTTGGAATGGCGAGACTTATAAGTGCCCTTGATACACATCTTAGTGTGAGCACACTGGCAGGAACACCTGGATATGTTCCACCAGAGTACTACCAGAGTTTCAGGTGCACTGCTAAGGGAGATGTGTACTCATTTGGAGTTGTGATGTTAGAACTGCTTAGTGGTAAACGCCCTACTGACAAGGAGGACTTTGGGGACACCAACTTGGTTGGGTGGGCAAAGATGAAGGTCCGTGAAGGGAAGCAAATGGAAGTAATTGACTCGGACTTGCTTTTGGCCACTCAAGGAACTGATGAGGCAGAAGCCAAAGAAGTGAAAGAGATGATAAGATATTTAGAGATTACTTTGCAGTGTGTTGATGACTTGCCTTCAAGAAGGCCAAACATGTTGCAGGTAGTGGCTATGCTCAGAGAGCTTATGCCTGGATCAACTGATGGAAGCAGCAACAGTGCTTGA 3399 0.4401 MEKNYVQLLPRLTVTLLVITVLFPVTECSAVSSIKTDAQALLMFKRMIQKDQSGVLSGWKLNKNPCSWYGVSCTLGRVTQLDISGNNDLAGTISLDPLSSLDMLSVLKLSLNXFSVNSTSLLQLPYGLTQLDLSFGGVTGPVPENLFSKCPNLVVVNLSYNNLTGPIPENFLQNSDKLQTLDLSSNNLSGSIFGLKMDCISLLQLDLSGNRLSDSIPLSLTNCTSLQSLNLANNMISGGIPKGLGQLNKLQTLDLSHNQLTGWIPSELGNACASLLEVKLSFNNISGSIPSGFSSCTLLQHLDIANNNLSGQLADSIFQNLGSLQELWLGNNAISGQFPSSLSSCKKLKIADFSSNKIYGSIPRDLCPGAASLEELRMPDNLITGEIPAELSKCSQLKTLDFSLNYLNGTIPEELGQLENLEQLIAWFNGLEGKIPSKLGQCKNLKDLILNNNHLTGGIPIELFNCSNLEWISLTSNELSGEIPREFGLLTRLAVLQLGNNSLTGEIPAELANCSSLVWLDLNSNKLTGEIPSRLGRQLGAKSLFGILSGNTLVFVRNVGNSCKGVGGLLEFSGIRPERLLQVPTLRTCDFTRLYSGPVLSLFTKYQTLEYLDLSYNELRGKIPDEFGDMVALQVLELSHNQLSGEIPSTLGQLKNLGVFDASHNRLQGHIPDSFSNLSFLVQIDLSNNELTGQIPSRGQLSTLPASQYANNPGLCGVPLPDCKSDNSQPTTNPTDDAGKGGHKTATATWANSIVMGTLISVASVCILIVWAIAMRARRKEAEEVKMLNSLQACHAATTWKIDKEKEPLSINVATFQRQLRKLKFSQLIEATNGFSAESLIGCGGFGEVFKATLKDGSSVAIKKLIRLSCQGDREFMAEMETLGKIKHRNLVPLLGYCKVGEERLLVYEYMEYGSLEEMLHGRIKTRDRRILTWEERKKIARGAAKGLCFLHHNCIPHIIHRDMKSSNVLLDHEMESRVSDFGMARLISALDTHLSVSTLAGTPGYVPPEYYQSFRCTAKGDVYSFGVVMLELLSGKRPTDKEDFGDTNLVGWAKMKVREGKQMEVIDSDLLLATQGTDEAEAKEVKEMIRYLEITLQCVDDLPSRRPNMLQVVAMLRELMPGSTDGSSNSA 1132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1566g00001 1132 FunFam serine/threonine-protein kinase BRI1-like 2 911 1128 - -
Vium1566g00001 1132 Gene3D Ribonuclease Inhibitor 148 723 IPR032675 -
Vium1566g00001 1132 CDD STKc_IRAK 841 1120 - -
Vium1566g00001 1132 SMART LRR_typ_2 247 271 IPR003591 -
Vium1566g00001 1132 SMART LRR_typ_2 515 538 IPR003591 -
Vium1566g00001 1132 SMART LRR_typ_2 321 345 IPR003591 -
Vium1566g00001 1132 SMART LRR_typ_2 296 320 IPR003591 -
Vium1566g00001 1132 SMART LRR_typ_2 150 174 IPR003591 -
Vium1566g00001 1132 SMART LRR_typ_2 630 654 IPR003591 -
Vium1566g00001 1132 SMART LRR_typ_2 442 466 IPR003591 -
Vium1566g00001 1132 SMART LRR_typ_2 490 514 IPR003591 -
Vium1566g00001 1132 ProSiteProfiles Leucine-rich repeat profile. 249 270 IPR001611 GO:0005515
Vium1566g00001 1132 Gene3D Phosphorylase Kinase; domain 1 795 910 - -
Vium1566g00001 1132 Pfam Leucine rich repeat N-terminal domain 35 73 IPR013210 -
Vium1566g00001 1132 FunFam serine/threonine-protein kinase BRI1-like 2 36 148 - -
Vium1566g00001 1132 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 369 554 - -
Vium1566g00001 1132 SUPERFAMILY RNI-like 57 241 - -
Vium1566g00001 1132 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 601 723 - -
Vium1566g00001 1132 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 270 362 - -
Vium1566g00001 1132 ProSiteProfiles Protein kinase domain profile. 835 1121 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1566g00001 1132 Pfam BspA type Leucine rich repeat region (6 copies) 288 383 IPR026906 -
Vium1566g00001 1132 PRINTS Leucine-rich repeat signature 247 260 - -
Vium1566g00001 1132 PRINTS Leucine-rich repeat signature 178 191 - -
Vium1566g00001 1132 Pfam Leucine rich repeat 128 188 IPR001611 GO:0005515
Vium1566g00001 1132 Pfam Leucine rich repeat 602 643 IPR001611 GO:0005515
Vium1566g00001 1132 Pfam Leucine rich repeat 202 260 IPR001611 GO:0005515
Vium1566g00001 1132 MobiDBLite consensus disorder prediction 720 744 - -
Vium1566g00001 1132 ProSitePatterns Protein kinases ATP-binding region signature. 841 864 IPR017441 GO:0005524
Vium1566g00001 1132 Gene3D Transferase(Phosphotransferase) domain 1 911 1129 - -
Vium1566g00001 1132 ProSitePatterns Serine/Threonine protein kinases active-site signature. 959 971 IPR008271 GO:0004672|GO:0006468
Vium1566g00001 1132 FunFam Calmodulin-binding receptor kinase CaMRLK 151 266 - -
Vium1566g00001 1132 Pfam Protein tyrosine and serine/threonine kinase 838 1116 IPR001245 GO:0004672|GO:0006468
Vium1566g00001 1132 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 284 1117 - -
Vium1566g00001 1132 Gene3D Ribonuclease Inhibitor 36 147 IPR032675 -
Vium1566g00001 1132 Pfam Brassinosteroid receptor island domain 545 603 IPR045381 -
Vium1566g00001 1132 SMART serkin_6 835 1121 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1566g00001 1132 SUPERFAMILY Protein kinase-like (PK-like) 816 1117 IPR011009 -
Vium1566g00001 1132 FunFam serine/threonine-protein kinase BRI1-like 2 796 910 - -
Vium1566g00001 1132 MobiDBLite consensus disorder prediction 724 738 - -
Vium1566g00001 1132 SUPERFAMILY RNI-like 197 436 - -
Vium1566g00001 1132 SUPERFAMILY L domain-like 368 723 - -
Vium1566g00001 1132 Gene3D - 548 604 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1566g00001 Vium-Chr1566 2136 5947 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1566g00001 41 1120 Receptor kinase-like Gene Family AT1G55610 49.376 0.0 1010
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Vium1566g00001 PK_Tyr_Ser-Thr 1.6e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1566g00001 - - gmx:100789959 2095.47